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Table 1 Overview of test datasets

From: SV-AUTOPILOT: optimized, automated construction of structural variation discovery and benchmarking pipelines

Type Genome Sequencer Length(bp) Insertsize (bp) Insert sd Coverage
Illumina 1.9 FastQ Paired End Tair9 SimSeq Illumina Profile 100 500 15 30x
Illumina 1.9 FastQ Paired End Tair9 SimSeq Illumina Profile 100 500 50 30x
Illumina 1.9 FastQ Paired End Human Genome hg19 SimSeq Illumina Profile 100 500 15 30x
Illumina 1.9 FastQ Paired End Human Genome hg19 SimSeq Illumina Profile 100 500 50 30x
  1. Arabisopsis (Tair9) and Human (hg19) datasets were simulated using a SimSeq Illumina 1.9 Paired End profile with 100 bp reads and an insert size of 500. Two standard deviations of insert size were created for each dataset, more ideal (15) and less ideal (50). All datasets were simulated to 30x coverage.
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