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Table 1 Overview of test datasets

From: SV-AUTOPILOT: optimized, automated construction of structural variation discovery and benchmarking pipelines

Type

Genome

Sequencer

Length(bp)

Insertsize (bp)

Insert sd

Coverage

Illumina 1.9 FastQ Paired End

Tair9

SimSeq Illumina Profile

100

500

15

30x

Illumina 1.9 FastQ Paired End

Tair9

SimSeq Illumina Profile

100

500

50

30x

Illumina 1.9 FastQ Paired End

Human Genome hg19

SimSeq Illumina Profile

100

500

15

30x

Illumina 1.9 FastQ Paired End

Human Genome hg19

SimSeq Illumina Profile

100

500

50

30x

  1. Arabisopsis (Tair9) and Human (hg19) datasets were simulated using a SimSeq Illumina 1.9 Paired End profile with 100 bp reads and an insert size of 500. Two standard deviations of insert size were created for each dataset, more ideal (15) and less ideal (50). All datasets were simulated to 30x coverage.