Table 2 Assembly statistics
From: Genomic factors related to tissue tropism in Chlamydia pneumoniae infection
| Â | Â | Â | Filtering | Â | Mapping | Â | Comparative assembly | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Isolate | Read length | Total seq. (Mb) | Passed filtering (Mb) | Passed filtering % | Filter criterion | Chlamydial reference isolate | Mapped total (Mb) | Mapped to human (Mb) | Mapped to Chlamydia (Mb) | Chlamydia reference coverage % | Total for comp. assembly (Mb) | # Contigs | Total assembled nucleotides | Average coverage |
CM1 | 76 | 2561 | 1827.9 | 71.38% | qual, l36 | AR39 | 1662.3 | 1518.7 | 143.6 | 99.9% | 309 | 1 | 1,229,887 | 147.0 |
CV14 | 74 | 2094 | 1747.1 | 83.44% | qual, l36, mp | CWL029 | 1703.1 | 1440.5 | 262.6 | 99.9% | 307 | 1 | 1,228,123 | 243.0 |
CV15 | 36 | 624 | 602.0 | 96.47% | qual, l30 | CWL029 | 498.3 | 388.9 | 109.5 | 99.9% | 213 | 3 | 1,228,165 | 86.5 |
CWL011 | 76 | 3061 | 2040.3 | 66.65% | qual, l36 | CWL029 | 1954.2 | 1876.8 | 77.4 | 99.9% | 163 | 1 | 1,228,579 | 58.3 |
CWL029c | 36 | 556 | 545.3 | 98.07% | qual, l30, mp | CWL029 | 532.1 | 463.5 | 68.6 | 99.8% | 82 | 7 | 1,228,575 | 56.0 |
DC9 | 74 | 1919 | 1724.6 | 89.87% | qual, l36, mp | CWL029 | 1640.8 | 1511.1 | 129.7 | 97.5% | 214 | 85 | 1,214,883 | 111.6 |
GiD | 76 | 1772 | 1675.8 | 94.57% | qual, l36, mp | AR39 | 1610.4 | 20.8 | 1589.6 | 99.9% | 1655 | 2 | 1,229,850 | 1,334.6 |
H12 | 76 | 294 | 259.0 | 88.11% | qual, l36, mp | CWL029 | 248.8 | 233.2 | 15.7 | 93.7% | 26 | 147 | 1,224,589 | 12.9 |
K7 | 74 | 2344 | 2137.0 | 91.17% | qual, l36, mp | CWL029 | 2076.6 | 1847.3 | 229.3 | 99.9% | 290 | 1 | 1,228,523 | 195.2 |
MUL2216 | 36 | 520 | 510.3 | 98.14% | qual, l30, mp | CWL029 | 467.6 | 420.8 | 46.8 | 99.8% | 90 | 7 | 1,228,567 | 38.2 |
Panola | 54 | 1025 | 912.0 | 88.98% | qual, l36, mp | CWL029 | 881.9 | 837.3 | 44.6 | 99.7% | 75 | 13 | 1,228,514 | 38.5 |
PB1 | 36 | 464 | 457.1 | 98.51% | qual, l30, mp | CWL029 | 446.4 | 302.1 | 144.3 | 99.9% | 155 | 2 | 1,228,135 | 113.2 |
PB2 | 74 | 1806 | 1612.0 | 89.26% | qual, l36, mp | CWL029 | 1564.9 | 1338.2 | 226.6 | 99.9% | 274 | 2 | 1,228,201 | 195.5 |
U1271 | 74 | 1623 | 1494.5 | 92.08% | qual, l36, mp | CWL029 | 1462.7 | 1351.4 | 111.3 | 99.9% | 143 | 3 | 1,228,567 | 93.9 |
UZG1 | 36 | 472 | 464.6 | 98.43% | qual, l30, mp | TW183 | 389.3 | 325.1 | 64.2 | 99.7% | 139 | 3 | 1,225,933 | 52.7 |
Wien1 | 76 | 1241 | 1150.2 | 92.68% | qual, l36, mp | CWL029 | 1120.5 | 885.5 | 235.0 | 99.9% | 265 | 1 | 1,228,125 | 195.5 |
Wien2 | 74 | 1955 | 1784.7 | 91.29% | qual, l36, mp | CWL029 | 1722.1 | 1440.8 | 281.3 | 99.8% | 344 | 9 | 1,228,526 | 237.8 |
Wien3 | 76 | 3223 | 1702.8 | 52.83% | qual, l36 | CWL029 | 1657.0 | 1344.6 | 312.4 | 99.9% | 358 | 1 | 1,228,576 | 243.8 |
YK41 | 36 | 549 | 538.0 | 97.99% | qual, l30, mp | AR39 | 522.7 | 492.1 | 30.6 | 99.0% | 46 | 61 | 1,229,406 | 25.0 |