Segment | Properties | ATC 220 | PMC 14.7 | PMC 48 | PMA 37.5 | PMC 58.5 | PMA 109.5 | PMC 58.7 | ATC 210 |
---|---|---|---|---|---|---|---|---|---|
Regions formed by reads unaligned with RIMD 2210633 | |||||||||
5,665 bp Insert | Insertion Sequence in position 674,415 of RIMD 2210633. Similarity with phage integrase and mobile element protein found in V. parahaemolyticus UCM-V493 [21]. GC% = 36.7. Average GC% in RIMD 2210633 is 45.4% | - | P | P | P | P | P | P | P |
6,637 bp Insert | 6,637 bp inserted in position 2.803.591 of RIMD 2210633. Closely related with regions found in other Vibrio species. With segments assigned to CDS designated as phage integrase and putative transposase. GC% = 41.5 | - | - | - | P | - | - | - | - |
160/384 bp Inserts | 5 to 12 tandem repeats with 32 bp units potentially inserted in two isolates at different positions. GC% = 50.0 | - | - | - | P | - | - | P | P |
Prophage VP58.5 | Lineal plasmid prophage of temperate bacteriophage VP58.5 [14,15]. GC% = 50.9 | - | - | - | - | P | P | - | - |
82.0 Kb plasmid | 83% coverage with 80% identity to plasmid p0908, a putative prophage also found in a Vibrio sp. [23]. GC% = 45.1 | - | - | - | - | - | P | - | - |
85.8 Kb plasmid | 97% coverage with 99% identity to plasmid pVPUCMV of environmental strain V. parahaemolyticus UCM- V493 [21]. It might be a prophage but only a few ORFs are annotated. GC% = 40.8 | - | - | - | - | - | P | - | - |
361 bp contig | 327 bp 91% identity pvdJ in drug resistant Ps. Aeruginosa PA381812. GC% = 49.0 | - | - | - | P | - | - | - | - |
Regions in RIMD 2210633 not covered by reads from at least one other isolate | |||||||||
Chromosome 1* | |||||||||
396,525–396,578 | 16/93 bp without annotation in reference genome | - | - | P | P | P | - | P | P |
670,436–670,451 | 16 bp VP0639 Hypothetical | P | P | P | P | P | P | P | - |
671,192–671,222 | 31 bp without annotation in reference genome | P | P | P | P | P | P | P | - |
1,658,835–1,667,479 | 8644 bp in PMC48 corresponding to VP1575-VP1583, genes of prophage f237 | P | P | - | P | P | P | P | P |
1,674,168–1,677,729 | 2.042 bp in ATC210 corresponding to VP1575-VP1583, genes of prophage alpha | P | P | P | P | P | P | P | - |
2,214,140–2,214,156 | Not annotated in RIMD 2210633. | P | P | P | - | P | P | P | P |
2,301,625–2,301,708 | 27 bp in VP2191 | P | P | P | - | P | P | P | P |
2,697,003–2,698,067 | 1064 bp in VP2552, DNA mismatch repair protein MutS | P | P | P | P | P | P | - | P |
Chromosome 2* | |||||||||
991,612–991,642 | 8-31 bp VPA0953 biofilm-associated surface protein | P | P | P | - | P | P | P | - |