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Figure 1 | BMC Genomics

Figure 1

From: Limitations of variable number of tandem repeat typing identified through whole genome sequencing of Mycobacterium avium subsp. paratuberculosis on a national and herd level

Figure 1

Maximum likelihood phylogenetic tree created from 3,039 concatenated variant sites using PhyML and the TPM1uf nucleotide substitution model, rooted to the “bison type” isolate (INMV 68). The tips are labeled as the VNTR type and the three most prevalent types are color-coded (INMV 2 = blue, INMV 3 = green, INMV 1 = red). Dotted lines indicate samples belonging to Herds A, B, and C, the eight divergent subtypes are labeled I-VIII, and bootstrap values of node support ≥ 70 are displayed.

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BMC Genomics

ISSN: 1471-2164

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