Table 3 The differentially-expressed transcripts involved in lignin biosynthesis
From: Transcript profiling of Populus tomentosa genes in normal, tension, and opposite wood by RNA-seq
Gene id | Enzyme family | Gene name | log 2 FC(NW/OW) | log 2 FC(NW/TW) | Phytozome ATG |
|---|---|---|---|---|---|
POPTR_0001s07400 | 4CL | Pt-4CL3 | 4.27 | 4.63 | AT3G21240.1 |
POPTR_0003s18720 | Pt-4CL5 | 6.52 | 7.03 | AT3G21240.1 | |
POPTR_0006s03180 | C3H | Pt-C3H3 | 3.43 | 3.83 | AT2G40890.1 |
POPTR_0013s15380 | C4H | Pt-C4H1 | 3.20 | 4.47 | AT2G30490.1 |
POPTR_0019s15110 | Pt-C4H2 | 1.62 | 2.40 | AT2G30490.1 | |
POPTR_0009s09870 | CAD | Pt-CAD1 | 2.08 | 1.68 | AT3G19450.1 |
POPTR_0005s11950 | CAld5H | Pt-CAld5H1 | 6.00 | 4.64 | AT4G36220.1 |
POPTR_0007s13720 | Pt-CAld5H2 | 5.34 | 4.22 | AT4G36220.1 | |
POPTR_0009s10270 | CCoAOMT | Pt-CCoAOMT1 | 2.57 | 3.25 | AT4G34050.1 |
POPTR_0001s31220 | Pt-CCoAOMT2 | 2.62 | 3.87 | AT4G34050.1 | |
POPTR_0003s17980 | CCR | Pt-CC-2 | 1.38 | 1.53 | AT1G15950.1 |
POPTR_0012s00670 | COMT | Pt-COMT2 | 4.04 | 3.94 | AT5G54160.1 |
POPTR_0003s18210 | HCT | Pt-HCT1 | 2.90 | 3.75 | AT5G48930.1 |
POPTR_0001s03440 | Pt-HCT6 | 5.48 | 5.14 | AT5G48930.1 | |
POPTR_0002s11880 | TFs | Pt-LIM1 | 3.84 | 4.23 | AT1G10200.1 |
POPTR_0014s01590 | Pt-LIM2 | 1.16 | 1.08 | AT1G10200.1 | |
POPTR_0015s05130 | Pt-MYB090 | 2.92 | 2.63 | AT1G17950.1 | |
POPTR_0009s13640 | Pt-MYB156 | 3.47 | 3.77 | AT4G38620.1 | |
POPTR_0012s03650 | Pt-MYB167 | 1.90 | 2.09 | AT1G17950.1 | |
POPTR_0004s18020 | Pt-MYB221 | 2.91 | 3.86 | AT4G38620.1 | |
POPTR_0006s12870 | PAL | Pt-PAL1 | 2.15 | 5.53 | AT2G37040.1 |
POPTR_0008s03810 | Pt-PAL2 | 3.87 | 5.63 | AT2G37040.1 | |
POPTR_0016s09230 | Pt-PAL3 | 1.15 | 4.35 | AT2G37040.1 | |
POPTR_0010s23100 | Pt-PAL4 | 3.86 | 4.52 | AT2G37040.1 | |
POPTR_0004s01510 | Peroxidase | Pt-PO1 | 3.75 | 2.25 | AT4G21960.1 |
POPTR_0006s13190 | Pt-PO2 | 2.44 | 3.13 | AT2G37130.1 |