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Table 4 Genes discussed in the text associated to high sensitivity to WLT and FB

From: Pre-symptomatic transcriptome changes during cold storage of chilling sensitive and resistant peach cultivars to elucidate chilling injury mechanisms

Function specific process Chillpeach ID Unigene annotation Arab AGI Arab gene symbol Hormone signaling Sugar signaling/ partioning Hormone and secondary metabolite biosynthesis regulation Cell wall and cytoesqueleton related Cell polarity
k-means 1. Associated with high sensitivity to WLT
Energy production
  Plasma membrane ATP production PPN027C11 Plasma membrane proton ATPase AT1G17260 AHA10    PA transport and polymerization  
RNA transcription regulation
  b-HLH family PPN080F10 Prf interactor 30137 AT2G27230 LHW AUX signaling    VN establishment, maintenance, cell number and pattern
  HB-family PPN069A12 BEL1-like homeodomain transcription factor AT2G35940 BLH1     
Signal transduction pathway
  AUX signaling/ AUX receptor E3 ubiquitin ligase SFC-TIR PPN078E01 Transport inhibitor response 1 protein AT3G62980 TIR1 AUX nuclear signaling    
  AUX signaling/ Nuclear signaling pathway PPN078G01 Putative auxin-resistance protein AT1G05180 AXR1 AUX nuclear signaling    
  Calcium signaling/ Calcium sensor-transducer PPN027B08 Calcium-dependent protein kinase AT3G57530 CPK32 ABA    
  Calcium signaling/ Calcium signal transducer PPN013H01 Serine/ threonine kinase AT5G58380 CIPK10/ SIP1/ SNRK3.8 ABA    
   PPN020F10 CBL-interacting protein kinase AT4G30960 SNRK3.14/ CIPK6/ SIP3 ABA sucrose signaling   
  ET signaling PPN057C10 Ethylene signaling protein AT5G03280 EIN2 ABA; positive regulator of ET signaling   Ethylene biosynthesis; positive regulator of ACS type I and negative regulator of ACS type II VN cell division regulation
  ET signaling/ Culin E3 ubiquitin ligase PPN020G10 Ethylene-overproduction protein 1 AT3G51770 ETO1    repressor of ET biosynthesis (inhibits type II ACS) VN cell division
  Phosphorylation cascades/ MAPK PPN020H02 Mitogen-activated protein kinase 4 AT4G01370 MPK4     Negative regulator of microtubule structure and stability; negative regulate MAP65-1
  Phosphorylation cascades/ metabolic switch PPN008G11 AKIN gamma AT3G48530 KING1 ABA Sucrose signaling   
  Phosphorylation cascades/ PP2A PPN037E11 Ser/thr protein phosphatase 2A regulatory subunit B’ gamma isoform AT4G15415 ATB’GAMMA    Yang Cycle regulation  
Transport
  Carbohydrate transport PPN025D11 SLT1 protein AT3G12570 FYD   Sugar partioning and homeostasis   
   PPN078G04 Putative membrane transporter AT2G43330 INT1   Sugar partioning and homeostasis   
  Cooper transport PPN025H09 Putative copper-transporting ATPase 3 AT1G63440 HMA5     
  ion channel PPN023C11 Mechanosensitive ion channel AT5G10490 MSL2     
  Mg transport PPN001H12 MRS2-5 AT2G03620 MGT3     
  oligopepetide transport PPN015D04 Metal-nicotianamine transporter YSL6 AT3G27020 YSL6     
   PPN028F10 Oligopeptide transporter OPT superfamily AT5G55930 OPT1     
   PPN035B10 Oligopeptide transporter 7 AT4G10770 OPT7     
   PPN057F10 Oligopeptide transporter-like protein AT3G54450      
k-means 11. Associated with high sensitivity to FB
Aminoacid metabolism
  GABA biosynthesis PPN044B12 Glutamate decarboxylase, putative AT3G17760 GAD5     
Pyruvate and Reactive carbonyl species
  Conversion of oxalacetate to PEP PP1002C02 Phosphoenolpyruvate carboxykinase [ATP] AT4G37870 PEPCK;PCK1     
  Pyruvate conversion to acetyl-CoA PPN054C12 Pyruvate dehydrogenase AT1G59900 PDHE1-A     
   PPN059C05 Pyruvate dehydrogenase E1 beta subunit isoform 3 AT5G50850 MAB1/PDHE1-     
  Pyruvate-lactate interconversions PP1006E06 Aldehyde dehydrogenase putative AT1G44170 ALDH4/ALDH3H1 ABA    
   PPN035E06 Aldehyde dehydrogenase AT1G44170 ALDH4/ALDH3H1 ABA    
   PPN038B05 Aldehyde dehydrogenase, putative AT1G44170 ALDH4/ALDH3H1 ABA    
  1. Abbreviations: AUX:auxin; ET; ethylene; ABA: Abcisic acid; PM:plasma membrane; CW: cell wall; SCW: secondary cell wall; ER: endoplasmic reticulum; MVB/LE:microvesicular body/late endosome; TGN/EE:trans-golgy network/early endosome; VSR:vacuolar sorting receptors VN: vascular networks; PA: proanthocyanines; PIN; PIN formed auxin efflux carrier; RG:rhamnogalacturonan; XyG:xyloglucan.
  2. References supporting information in Table 4 are provided in Additional file 8: Table S7.