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Table 3 The most significant SNPs with the closest and candidate genes in 3 suggestively associated regions

From: A genome-wide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance

Linkage group

SNP ID

SNP position (bp)

-log 10 (P-value)

Gene name

Gene position (bp)

7

AX-85432363

19715765

5.01

cysteinyl leukotriene receptor 2

19913410, 19914493

AX-85417541

20399460

5.33

guanine nucleotide-binding protein (G protein) subunit beta 1*

19923349, 19927379

AX-85231041

22082916

4.89

voltage-dependent calcium channel subunit alpha 2/delta 2#

20083452, 20300502

AX-85406722

22298185

4.83

hyaluronidase 2

20409454, 20413226

AX-85205344

22410724

5.12

tumor suppressor candidate 2

20415941, 20421024

AX-85278425

25230627

5.12

diphosphoinositol polyphosphate phosphohydrolase 1

20432914, 20443526

protein kinase C and casein kinase substrate in neurons protein 1

20469564, 20487008

N-terminal EF-hand calcium-binding protein 1

22274849, 22324281

alpha-1-syntrophin

22377042, 22408256

probable G-protein coupled receptor 27

25065312, 25066872

12

AX-85394454

12067569

4.89

phosphatidylinositol 3-kinase regulatory subunit 5†

12246367, 12272207

AX-85211547

14746472

4.79

phosphatidylinositol 3-kinase regulatory subunit 6†

12281638, 12300055

guanine nucleotide-binding protein subunit beta 3*

12763269, 12767890

voltage-dependent calcium channel gamma 6 subunit#

14286927, 14292214

    

chondroitin sulfate proteoglycan 4

13668415, 13668975

14

AX-85234783

1601158

4.20

Spectrin beta chain, non-erythrocytic 2

1614033, 1619504

  1. The paralogs are marked by different symbols following the gene names.