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Table 3 The most significant SNPs with the closest and candidate genes in 3 suggestively associated regions

From: A genome-wide association study in catfish reveals the presence of functional hubs of related genes within QTLs for columnaris disease resistance

Linkage group SNP ID SNP position (bp) -log 10 (P-value) Gene name Gene position (bp)
7 AX-85432363 19715765 5.01 cysteinyl leukotriene receptor 2 19913410, 19914493
AX-85417541 20399460 5.33 guanine nucleotide-binding protein (G protein) subunit beta 1* 19923349, 19927379
AX-85231041 22082916 4.89 voltage-dependent calcium channel subunit alpha 2/delta 2# 20083452, 20300502
AX-85406722 22298185 4.83 hyaluronidase 2 20409454, 20413226
AX-85205344 22410724 5.12 tumor suppressor candidate 2 20415941, 20421024
AX-85278425 25230627 5.12 diphosphoinositol polyphosphate phosphohydrolase 1 20432914, 20443526
protein kinase C and casein kinase substrate in neurons protein 1 20469564, 20487008
N-terminal EF-hand calcium-binding protein 1 22274849, 22324281
alpha-1-syntrophin 22377042, 22408256
probable G-protein coupled receptor 27 25065312, 25066872
12 AX-85394454 12067569 4.89 phosphatidylinositol 3-kinase regulatory subunit 5 12246367, 12272207
AX-85211547 14746472 4.79 phosphatidylinositol 3-kinase regulatory subunit 6 12281638, 12300055
guanine nucleotide-binding protein subunit beta 3* 12763269, 12767890
voltage-dependent calcium channel gamma 6 subunit# 14286927, 14292214
     chondroitin sulfate proteoglycan 4 13668415, 13668975
14 AX-85234783 1601158 4.20 Spectrin beta chain, non-erythrocytic 2 1614033, 1619504
  1. The paralogs are marked by different symbols following the gene names.