Table 5 List of expressed genes involved in fatty acid and TAG biosynthesis in lesquerella seed
| Â | Gene | At ID | isotigs | %of nucleotide identity | #of isotigs | ORF |
|---|---|---|---|---|---|---|
Partial (P) or Full length (F) | ||||||
De novo fatty acid biosynthesis and export from plastid | BCCP1 | At5g16390 | isotig19563 | 88 | 7 | P |
BCCP2 | At5g15530 | isotig07553 | 89 | 3 | F | |
α-CT | At2g38040 | isotig03259 | 90 | 17 | F | |
MCMT | At2g30200 | isotig17972 | 93 | 5 | P | |
ACP5 | At5g27200 | isotig07684 | 89 | 6 | F | |
KASII | At1g74960 | isotig15566 | 91 | 6 | F | |
KAR | At1g24360 | isotig08993 | 91 | 5 | F | |
HAD | At5g10160 | isotig23452 | 88 | 9 | P | |
ER | At2g05990 | isotig17121 | 93 | 4 | F | |
FAB2 | At2g43710 | isotig11458 | 91 | 6 | F | |
FatA-1 | At3g25110 | isotig17885 | 89 | 1 | F | |
FatA-2 | At3g25110 | isotig17382 | 90 | 1 | F | |
FatB | At1g08510 | isotig09645 | 88 | 4 | P | |
LACS8 | At2g04350 | isotig15424 | 90 | 1 | F | |
LACS9 | At1g77590 | isotig15369 | 89 | 1 | P | |
Endoplasmic reticulum-hydroxylase, desaturase, and elongase | FAH12 | AF016103 | isotig27455 | 95 | 7 | F |
FAD2 | At3g12120 | isotig17487 | 88 | 2 | F | |
FAD3-1 | At2g29980 | isotig17127 | 92 | 1 | F | |
FAD3-2 | At2g29980 | isotig00061 | 84 | 58 | F | |
KCS18 | AF367052 | isotig02742 | 97 | 28 | F | |
Acyl-CoA- dependent TAG synthesis in Kennedy pathway | GPAT9 | At5g60620 | isotig18564 | 94 | 2 | P |
LPAT2 | At3g57650 | isotig03872 | 92 | 2 | F | |
DGAT1-1 | At2g19450 | isotig11157 | 91 | 2 | P | |
DGAT1-2 | At2g19450 | isotig11156 | 90 | 1 | P | |
DGAT2 | At3g51520 | isotig19956 | 87 | 1 | F | |
DGAT3 | At1g48300 | isotig08903 | 91 | 3 | F | |
PC-mediated TAG synthesis | LPCAT1 | At1g12640 | isotig03769 | 91 | 10 | F |
LPCAT2 | At1g63050 | isotig16468 | 92 | 1 | P | |
PDAT1-1 | At5g13640 | isotig08780 | 92 | 1 | F | |
PDAT1-2 | At5g13640 | isotig08781 | 90 | 15 | P | |
PDAT2 | At3g44830 | isotig02595 | 86 | 12 | P | |
PDCT | At3g15820 | isotig25038 | 89 | 1 | P |