Skip to main content

Table 4 Known miRNA families and their expression abundance in CK and Na200 libraries

From: Identification of novel and salt-responsive miRNAs to explore miRNA-mediated regulatory network of salt stress response in radish (Raphanus sativus L.)

Family

No. of members

miRNA reads

Total reads

Ratio (Na200/CK)

CK

Na200

Conserved miRNA

miR156/157

14

390,906

477,699

868,605

1.22

miR158

3

699,743

3,592,759

4,292,502

5.13

miR159

4

3,509

2,881

6,390

0.82

miR160

6

4,119

3,776

7,895

0.92

miR161

1

0

10

10

_

miR162

1

750

922

1,672

1.23

miR164

5

21,869

70,350

92,219

3.22

miR165/166

14

91,496

208,941

300,437

2.28

miR167

9

24,223

19,501

43,724

0.81

miR168

4

196,762

319,663

516,425

1.62

miR169

9

10,148

2,552

12,700

0.25

miR171

1

155

28

183

0.18

miR172

6

1,486

4,762

6,248

3.20

miR319

3

14,416

17,633

32,049

1.22

miR390

4

431

911

1,342

2.10

miR391

1

1,066

1,993

3,059

1.87

miR393

1

15

13

28

0.87

miR394

2

201

416

617

2.07

miR395

3

95

48,134

48,229

506.67

miR396

4

981

1,177

2,158

1.20

miR397

1

15,201

6,493

21,694

0.43

miR398

4

2,032

326

2,358

0.16

miR399

5

249

150

399

0.60

miR403

1

1,634

2,649

4,283

1.62

miR408

4

269,431

115,871

385,302

0.43

miR482

2

145

1,543

1,688

10.64

MiR535

1

0

1,524

1,524

_

miR2111

4

341

122

463

0.36

Non-conserved miRNA

miR400

1

137

151

288

1.10

miR414

1

344

0

344

0.00

miR774

1

3,704

4,062

7,766

1.10

miR824

2

529

619

1,148

1.17

miR825

1

1,455

1,861

3,316

1.28

miR827

1

275

230

505

0.84

miR841

1

0

293

293

_

miR845

2

3,003

7,471

10,474

2.49

miR857

1

1,413

819

2,232

0.58

miR1511

2

10,593

25,438

36,031

2.40

miR1520

1

17,011

17,004

34,015

1.00

miR2118

1

27,628

20,177

47,805

0.73

miR2615

1

7,581

1,074

8,655

0.14

miR5298

2

21

39

60

1.86

miR5649

1

35

45

80

1.29