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Table 4 Known miRNA families and their expression abundance in CK and Na200 libraries

From: Identification of novel and salt-responsive miRNAs to explore miRNA-mediated regulatory network of salt stress response in radish (Raphanus sativus L.)

Family No. of members miRNA reads Total reads Ratio (Na200/CK)
CK Na200
Conserved miRNA
miR156/157 14 390,906 477,699 868,605 1.22
miR158 3 699,743 3,592,759 4,292,502 5.13
miR159 4 3,509 2,881 6,390 0.82
miR160 6 4,119 3,776 7,895 0.92
miR161 1 0 10 10 _
miR162 1 750 922 1,672 1.23
miR164 5 21,869 70,350 92,219 3.22
miR165/166 14 91,496 208,941 300,437 2.28
miR167 9 24,223 19,501 43,724 0.81
miR168 4 196,762 319,663 516,425 1.62
miR169 9 10,148 2,552 12,700 0.25
miR171 1 155 28 183 0.18
miR172 6 1,486 4,762 6,248 3.20
miR319 3 14,416 17,633 32,049 1.22
miR390 4 431 911 1,342 2.10
miR391 1 1,066 1,993 3,059 1.87
miR393 1 15 13 28 0.87
miR394 2 201 416 617 2.07
miR395 3 95 48,134 48,229 506.67
miR396 4 981 1,177 2,158 1.20
miR397 1 15,201 6,493 21,694 0.43
miR398 4 2,032 326 2,358 0.16
miR399 5 249 150 399 0.60
miR403 1 1,634 2,649 4,283 1.62
miR408 4 269,431 115,871 385,302 0.43
miR482 2 145 1,543 1,688 10.64
MiR535 1 0 1,524 1,524 _
miR2111 4 341 122 463 0.36
Non-conserved miRNA
miR400 1 137 151 288 1.10
miR414 1 344 0 344 0.00
miR774 1 3,704 4,062 7,766 1.10
miR824 2 529 619 1,148 1.17
miR825 1 1,455 1,861 3,316 1.28
miR827 1 275 230 505 0.84
miR841 1 0 293 293 _
miR845 2 3,003 7,471 10,474 2.49
miR857 1 1,413 819 2,232 0.58
miR1511 2 10,593 25,438 36,031 2.40
miR1520 1 17,011 17,004 34,015 1.00
miR2118 1 27,628 20,177 47,805 0.73
miR2615 1 7,581 1,074 8,655 0.14
miR5298 2 21 39 60 1.86
miR5649 1 35 45 80 1.29