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Table 6 The target genes for some salt-responsive known miRNAs

From: Identification of novel and salt-responsive miRNAs to explore miRNA-mediated regulatory network of salt stress response in radish (Raphanus sativus L.)

miRNA Target gene No. Description Gene name
miR156/157 CL5609.Contig1 ethylene-responsive transcription factor ERF113 Rap2.6 L
  CL967.Contig2 glutamine synthetase GS2
  EX767226 squamosa promoter-binding-like protein 13 SPL13
  FD556392 squamosa promoter-binding-like protein 2 SPL2
  FD946000, FD946993, FD946993, FD560558, FD988312, EY898725, EX756914, EV551892, EV528056, Rsa#S43017568 squamosa promoter-binding-like protein 3 SPL3
  FD557561, EX762240 squamosa promoter-binding-like protein 5 SPL5
  EY930450 squamosa promoter-binding-like protein 6 SPL6
  EX886942, EW715846,EX771535, EV548910 squamosa promoter-binding-like protein 9 SPL9
miR159 EY949798, EY938664, Rsa#S42037487 myb domain protein 101 MYB101
  EY896930 myb domain protein 65 MYB65
  FD584389, EY935636, FD977876, Rsa#S42034459, Rsa#S42591074 putative ubiquitin-conjugating enzyme E2 17 UBC17
miR160 FD576484, FD550653, EV524607, Rsa#S42581764 auxin response factor 16 ARF16
  EX896877 auxin response factor 17 ARF17
miR164 EX773809 NAC domain containing protein 80 NAC80
  EW715661, EV566600 NAC domain containing protein 100 NAC100
miR165/166 Unigene8382 defensin-like protein 2 LCR69
  Unigene16151 ATP synthase subunit G protein  
miR169 EV547500, EV543544 glutamate decarboxylase 5 GAD5
  Unigene27845 histone acetyltransferase HAC1 HAC1
  EX750227 nuclear transcription factor Y subunit A-2 NF-YA2
  FD989248, EV526819 nuclear transcription factor Y subunit A-3 NF-YA3
miR172 EX761783 AP2-like ethylene-responsive transcription factor SNZ SNZ
  EW732550 AP2-like ethylene-responsive transcription factor TOE2 TOE2
  EY906836, FD572123 Floral homeotic protein APETALA 2 AP2
  EY910663 sulfate transporter 1.3 SULTR1;3
miR395 EX903518, FY437914, FY449298, FY448599, FY444096, FY449933, FY444103, EV539245 ATP sulfurylase 1 APS1
  FY443904, FY441630, FY445587, FY444933,FY443821, FY442807, FY442799, EY933376, EY916371 sulfate adenylyltransferase APS4
miR396 EW733962, EY907316 transcription factor bHLH74  
  EW733484, FY442946, FD941766, FD563793, EW713404, EW713403, FD971887, FD555982, FD551358, FD541643, EY908741, EX771641, EV550709, EV536225, EV535300, EV528362, EV524610 atypical CYS HIS rich thioredoxin 5 ACHT5
  EY930318 L-ascorbate peroxidase 1 APX1
miR397 FY438692 laccase 2 LAC2
  FD987950, FY452752 laccase 11 LAC11
  FD989705, EV528485 laccase 17 LAC17
  Unigene4183 Lectin-domain containing receptor kinase A4.3 LECRKA4.3
miR398 FD972015, FD549426, FD544311, EX773977, EX757683, EX749645, EV525782 superoxide dismutase [Cu-Zn] CSD1
miR399 FD560927, EX890146 putative ubiquitin-conjugating enzyme E2 24 PHO2/UBC24
miR403 EW726356, EX749374, Rsa#S41987411 Argonaute family protein AGO2
miR414 Unigene3598 ABC transporter G family member 10  
  FD967208 AP2-like ethylene-responsive transcription factor SNZ SNZ
  CL5793.Contig1 CBL-interacting serine/threonine-protein kinase 21 CIPK21
  Unigene10439 pentatricopeptide repeat-containing protein  
  EV527283, EY913653 potassium transporter KUP3p
  EX886639 scarecrow-like protein 13 SCL13
miR482 FD580320 MATE efflux family protein FRD3
miR841 Unigene15520 bZIP transcription factor family protein  
  1. Detailed information of target genes for all salt-responsive miRNAs was listed in Additional file 5.