Figure 9

Phylogenetic trees of Chlorophyta inferred from a 50-gene dataset. (A) Bayesian majority rule tree showing all compatible partitions, inference from the protein alignment of 50 concatenated chloroplast genes (9,300 amino acid positions and 51 terminal taxa). Node support is given as Bayesian posterior probabilities and maximum-likelihood (ML) bootstrap values of the protein analyses (above branches), and the nucleotide analyses (below branches); values <0.9 and 50, respectively, are not shown; asterisks indicated full support in both the Bayesian and ML analyses. (B) Bayesian tree inference from the nucleotide alignment (first two codon positions) of 50 concatenated chloroplast genes (18,600 nucleotide positions and 51 terminal taxa). Node support is given as Bayesian posterior probabilities and maximum-likelihood (ML) bootstrap values, and asterisks indicate full support in both analyses.