| |
HiSeq
|
MiSeq
|
simBA-5
|
simHC.20.500
|
|---|
| |
Prec
|
Sens
|
Speed
|
Prec
|
Sens
|
Speed
|
Prec
|
Sens
|
Speed
|
Prec
|
Sens
|
Speed
|
|---|
|
NBC (k=15)
|
68.67
|
68.70
|
0.008
|
68.33
|
68.33
|
0.007
|
91.74
|
91.74
|
0.007
|
94.32
|
94.32
|
0.005
|
|
Clark (k=20)
|
69.44
|
61.46
|
272
|
70.72
|
62.45
|
239
|
91.32
|
82.48
|
269
|
94.34
|
94.32
|
96
|
|
Kraken (k=31)
|
74.00
|
53.49
|
2,332
|
77.72
|
58.72
|
1,361
|
92.99
|
78.70
|
1,976
|
84.67
|
84.31
|
237
|
|
Clark (k=31)
|
86.74
|
58.59
|
3,011
|
89.49
|
61.84
|
1,566
|
98.85
|
76.80
|
2,855
|
94.67
|
94.26
|
251
|
|
Kraken-Q (k=31)
|
75.88
|
50.78
|
6,224
|
78.07
|
53.68
|
5,308
|
92.67
|
74.39
|
7,023
|
82.40
|
74.84
|
3,809
|
|
Clark-E (k=31)
|
90.08
|
55.18
|
30,976
|
94.31
|
58.36
|
24,029
|
98.92
|
66.02
|
24,996
|
92.78
|
92.38
|
15,583
|
|
Clark-l (k=27)
|
85.35
|
53.95
|
1,676
|
85.89
|
64.91
|
904
|
85.55
|
46.28
|
1,702
|
94.06
|
93.53
|
141
|
- Precision and sensitivity are expressed as percentages, while speed is expressed in 103 reads per minute for NBC, KRAKEN, and CLARK on the classification of “HiSeq”, “MiSeq”, “simBA-5” and “simHC.20.500” metagenome datasets against the 1473 species-level targets, in single-threaded mode.
