Meloidogyne javanica fatty acid- and retinol-binding protein (Mj-FAR-1) regulates expression of lipid-, cell wall-, stress- and phenylpropanoid-related genes during nematode infection of tomato

Table 1 Alignment of RNA-Seq reads to the ITAG2.3 reference transcriptome

Treatment	Non-inoculated		2 DAI		5 DAI		15 DAI
Root lines	OE	KAN	OE	KAN	OE	KAN	OE	KAN
High Quality Paired-End Reads	27,267,694	27,277,056	25,641,052	26,805,144	26,170,776	26,498,432	26,382,764	26,932,422
Uniquely Aligned Reads	20,798,101	20,941,168	19,677,396	20,722,903	19,444,292	20,150,007	19,296,181	20,207,686
Total Unmapped Reads	6,071,686	5,911,916	5,568,661	5,679,513	6,306,052	5,877,328	6,581,004	6,168,739

The number of paired-end and uniquely aligned sequence reads analyzed from Illumina sequencing runs of all eight samples are arranged by treatment type (noninoculated, and 2, 5, and 15 DAI) and root line.

ISSN: 1471-2164