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Table 1 Alignment of RNA-Seq reads to the ITAG2.3 reference transcriptome

From: Meloidogyne javanica fatty acid- and retinol-binding protein (Mj-FAR-1) regulates expression of lipid-, cell wall-, stress- and phenylpropanoid-related genes during nematode infection of tomato

Treatment Non-inoculated 2 DAI 5 DAI 15 DAI
Root lines OE KAN OE KAN OE KAN OE KAN
High Quality Paired-End Reads 27,267,694 27,277,056 25,641,052 26,805,144 26,170,776 26,498,432 26,382,764 26,932,422
Uniquely Aligned Reads 20,798,101 20,941,168 19,677,396 20,722,903 19,444,292 20,150,007 19,296,181 20,207,686
Total Unmapped Reads 6,071,686 5,911,916 5,568,661 5,679,513 6,306,052 5,877,328 6,581,004 6,168,739
  1. The number of paired-end and uniquely aligned sequence reads analyzed from Illumina sequencing runs of all eight samples are arranged by treatment type (noninoculated, and 2, 5, and 15 DAI) and root line.