Table 2 Differentially expressed genes common to noninoculated and inoculated mj-far-1 -overexpressing root line and their functional categories

Cell Wall

Proteins LLR

Solyc07g053840.1.1

-2.44

-2.20

-9.83

-2.24

LRP receptor-like serine/threonine-protein kinase , RLP

Cellulose synthesis COBRA

Solyc03g114900.2.1

-1.22

-1.19

-2.29

-1.46

COBRA-like protein

Degradation pectate lyase and polygalacturonases

Solyc12g096750.1.1

-2.32

-3.37

-1.90

-7.01

Polygalacturonase 4

Modification

Solyc10g086520.1.1

-1.23

-1.49

-1.81

-1.02

Expansin-1

UDP glucosyl and glucoronyl transferase

Solyc05g053400.1.1

2.20

2.57

1.15

3.53

Glucosyltransferase

Cell organization

Chloroplast location

Solyc06g062400.1.1

2.12

1.65

2.26

1.70

Cloroplast unusual positioning 1A

Development

Nodule formation

Solyc05g055540.1.1

2.94

1.64

2.54

1.99

Nodulin family protein

unkown

Solyc06g082460.1.1

-1.90

-1.29

-1.11

-1.46

Plant-specific domain TIGRO1568 family protein

Hormone metabolism

Auxin induced/regulated/responsive

Solyc02g092820.2.1

-2.99

-1.80

-4.29

-5.59

Indole-3-acetic acid-amido synthetase GH3.8

Solyc12g005310.1.1

-2.75

-1.18

-3.60

-4.05

Auxin-responsive GH3-like

Ethylene synthesis/degradation

Solyc09g010000.2.1

1.42

1.80

1.87

1.11

1-aminocyclopropane-1-carboxylate oxidase-like protein

Solyc11g072310.1.1

1.51

1.45

1.41

1.72

Gibberellin 20 -oxidase-3

Solyc06g073580.2.1

-3.78

-1.50

-1.01

1.16

1-aminocyclopropane-1-carboxylate oxidase-like protein

Jasmonic acid induced/regulated/responsive

Solyc03g098710.1.1

-4.38

-1.50

-2.09

2.49

Kunitz-type proteinase inhibitor A4 (Fragment)

Solyc03g098720.2.1

-10.39

-1.72

-10.48

4.26

Kunitz trypsin inhibitor

Lipid metabolism

FA Synthesis and FA Elongation

Solyc08g008310.2.1

-3.21

-2.93

-3.52

-3.27

Long-chain-fatty-acid-CoA ligase

Phospholipid synthesis

Solyc12g040790.1.1

-1.07

-1.19

-1.40

2.19

Menaquinone biosynthesis methyltransfere ubiE

Lipid modification

Solyc05g018770.1.1

-2.58

-12.08

-10.93

-4.19

Esterase/lipase/thioesterase (Fragment)

N-metabolism/degradation

Glutamate dehydrogenase

Solyc05g052100.2.1

-5.33

-11.68

-2.12

-1.56

Glutamate dehydrogenase

Phosphotransfer and Pyrophoshatases guanylate kinase

Solyc10g79140.1.1

1.30

1.75

2.57

2.48

Guanylate kinase

NUDIX hydrolases

Solyc07g045430.2.1

2.34

2.61

1.62

-2.97

Nudix hydrolase 2

Polyamine metabolism

SAM/decarboxylase

Solyc06g054460.1.1

-1.37

-2.12

-1.17

-1.96

S-adenosylmethionine decarboxylase proenzyme

Spermidine/synthase

Solyc06g053510.2.1

-5.21

-2.87

-1.88

1.21

Spermidine synthase

Protein metabolism

Protease

Solyc05g016250.2.1

-11.21

-11.18

-11.08

-9.72

Cysteine-type peptidase

Solyc07g066500.1.1

11.02

9.87

4.88

11.14

U1p1 protease family C-terminal catalytic domain containing protein

Solyc01g057880.1.1

-4.10

-5.48

-3.35

-4.10

U1p1 protease family C-terminal catalytic domain containing protein

Postranslational modification

Solyc08g066400.1.1

-10.91

-10.97

-10.39

-10.64

Protein kinase (Fragment)

Solyc03g083800.1.1

5.01

10.74

5.59

11.45

Serine/threonine-protein phosphatase 7 long form homolog

Targeting

Solyc12g096550.1.1

1.20

1.10

1.23

1.11

Pheophorbide a oxygenase family

Transcription factor

GeBP like

Solyc07g052900.1.1

1.21

1.55

1.66

1.96

Os09g0451700 protein (Fragment)

Solyc07g052700.2.1

2.84

2.57

4.21

2.30

MADS-box transcription factor 1

MADS box transcription factor/family

Solyc02g089200.2.1

4.79

3.11

5.74

4.14

MADS-box transcription factor

Solyc07g052720.2.1

3.67

2.31

4.65

2.99

MADS-box protein AGL66

Putative transcription regulator

Solyc10g051140.1.1

-1.94

-2.58

-1.90

-1.81

Genomic DNA chromosome 5 P1 clone MTE17

WRKY domain transcription factor family

Solyc05g053380.2.1

-2.30

-1.99

1.60

-2.02

WRKY transcription factor 31

unknown

Solyc01g100440.1.1

2.07

1.33

1.89

2.42

Transcription regulatory protein SNF5

Secondary metabolism

Isoflavone reductase

Solyc10g052500.1.1

-4.36

-510

-3.32

-4.16

Phenylcoumaran benzylic ether reductase 3

Isoprenoids/terpenoids

Solyc10g005390.2.1

1.86

1.47

2.96

2.67

Linalool synthase

Phenylpropanoids

Solyc02g08100.1.1

2.24

2.86

3.13

1.41

Acyltransferase (Fragment)

Signaling

Sugar and nutrien phisiology

Solyc12g099780.1.1

-1.69

-1.48

1.91

1.05

Unknown Protein

Receptor kinase leucine rich repeat XI

Solyc12g009780.1.1

8.74

3.37

3.18

8.43

LRR receptor-like serine/ threonine-protein kinase, RLP

Abiotic stress

Heat stress

Solyc06g011400.2.1

4.54

2.57

4.40

2.45

ATP-dependent chaperone c1pB

Solyc06g11380.2.1

5.99

3.67

4.70

2.51

Chaperone C1pB

Solyc06g011370.2.1

3.86

3.46

3.52

2.25

Chaperone protein clpB 2

Plant defence

Pathogen attack response

Solyc09g007020.1.1

1.70

1.24

1.07

1.14

Pathogenesis-related protein

Pathogen resistance

Solyc07g009510.1.1

2.56

2.44

1.76

1.05

Chitinase

Gene to gene resistance/recognation

Solyc12g044190.1.1

1.07

1.33

2.37

2.18

Nbs-lrr, resistance protein

Solyc01g081250.2.1

1.22

1.02

1.34

1.08

Glutathione-S-transferase

Solyc03g116120.1.1

2.80

1.87

2.18

1.99

Glutathione S-transferase 12

Solyc08g014330.2.1

-2.24

-1.19

-1.06

1.08

Primary amine oxidase

unknown

Solyc01g017600.2.1

-2.17

-5.86

-10.57

1.48

Plant viral-response family protein

Transport

Amino acids

Solyc01g100390.2.1

2.12

2.04

2.63

1.21

Pyrophosphate-energized proton pump

Peptides and oligopeptides

Solyc03g113430.2.1

1.63

1.24

3.70

1.28

Peptide transporter

unknown

Solyc01g73670.2.1

-1,60

-1.63

-1.98

1.22

Uncharacterized MFS-type transporter C19orf28

Protease inhibitor/seed storage /lipid transfer protein (LTP) family protein

Solyc03g083990.1.1

-2.08

1.15

1.25

-2.66

Cortical cell-delineating protein

Not assigned

unknown

Solyc04g015610.2.1

-1.89

-1.27

-1.50

-3.73

Os01g0611000 protein (Fragment)

Solyc10g080380.1.1

-1.53

-3.73

-3.61

-1.55

Unknown Protein

Solyc07g007770.1.1

-6.36

-5.19

-5.23

-4.54

Unknown Protein

Solyc09g091810.1.1

-2.80

-1.29

-1.62

-2.78

Unknown Protein

Solyc01g056370.2.1

12.79

12.99

13.67

13.64

Unknown Protein

Solyc05g052880.2.1

1.93

1.37

1.89

3.33

Unknown Protein