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Table 3 Differentially expressed genes upon M. javanica inoculation

From: Meloidogyne javanica fatty acid- and retinol-binding protein (Mj-FAR-1) regulates expression of lipid-, cell wall-, stress- and phenylpropanoid-related genes during nematode infection of tomato

Functional categories Sub-category Gene ID OE2-KAN2 OE3-KAN3 OE4-KAN4 Annotation
TCA/ org. transformation Carbonic anhydrases solyc02g067750.2.1 1.99565 2.704447 2.324205 Carbonic anhydrase
Cell wall Degradation pectate lyases and polygalacturonases solyc08g068150.2.1 -1.17686 1.198919 1.5876 BURP domain-containing protein
Modification solyc08g077900.2.1 -1.5738 -1.34033 -1.07768 Expansin-like protein
solyc03g093390.2.1 -1.23629 -1.69975 1.122155 Expansin protein
Lipid metabolism FA synthesis and FA elongation solyc03g005320.2.1 -1.21734 1.118395 1.412513 Fatty acid elongase 3-ketoacyl-CoA synthase
Lipid degradation solyc01g100020.2.1 -1.6392 -1.60844 -1.23022 Phospholipase D
Amino acid metabolism Synthesis solyc01g006620.2.1 -1.39285 1.576919 1.629744 Phosphoribosylanthranilate trnasferase
Secondary metabolism Flavonoids solyc05g053550.2.1 2.880173 1.665111 -1.64308 Chalcone synthase
Simple phenols solyc06go76760.1.1 -1.14152 1.327023 1.041531 Laccase 1a
Hormone metabolism Gibberelin synthesis/degradation solyc12g042980.1.1 -2.48967 -2.80308 -1.41139 2-oxoglutarate- dependent dioxygenase
Tetrapyrrole synthesis Unspecified solyc12g005300.1.1 -1.37617 -1.44432 1.099574 Chlorophyllase 2
Plant Defense Gen to resistance/recognition solyc11g0066401.1 -2.44176 1.276086- 1.705295 Cc-nbs-lrr, resistance protein
  solyc07g006710.1.1 -1.12202 -2.25906 -1.15715 Pathogenesis-related protein PR-1
Pathogen attack response solyc01g106640.2.1 -1.43339 -2.26051 -3.62562 Pathogenesis-related protein 1
Redox state solyc07g039410.2.1 -2.20729 -1.85636 -1.61107 Nbs-lrr, resistance protein
solyc05g046030.2.1 -1.44323 -1.95476 -1.75115 Peroxidase
solyc01g006290.2.1 -4.44176 -2.66733 1.965054 Peroxidase
solyc01g006310.2.1 -2.19935 -1.68906 -1.71087 Peroxidase
solyc05g006740.2.1 -1.39462 -1.67555 -1.25058 Glutathione S-transferase
Miscelaneous CytochromeP450 solyc07g052370.2.1 1.592891 1.144126 2.253552 Cytochrome P450
Transcription factor C2c2(Zn) Co-like, Constans-like zinc finger family solyc07g066510.2.1 -3.16422 -2.54704 2.541796 Zinc finger protein CONSTANS-LIKE 2
MYB domain transcription factor family solyc06g005310.2.1 -1.3004 1.639491 1.189045 MYB transcription factor
  solyc10g008700.1.1 -1.65232 2.339096 1.861414 MYB transcription factor
bZIP transcription factor family solyc02g072570.1.1 -1.32419 -1.23206 -2.44191 Transcription factor bZIP98
Aux/IAA family solyc08g021820.2.1 -10.0373 -2.64797 -4.15734 Auxin responsive protein
Putative transcription regulator solyc01g081320.2.1 -1.85679 1.327023 1.545638 Pentatricopeptide repeat-containing protein
Protein metabolism Targeting solyc07g017520.2.1 -1.36494 1.651521 1.06459 Conserved oligomeric Golgi complex subunit 3
Posttranslational regulator solyc04g15120.2.1 -1.7365 -1.3454 -1.44333 U-box domain containing protein expressed
  solyc09g083410.2.1 1.002774 1.290076 1.408902 Amidase hydantoinase/carbamoylase family protein expressed
Degradation solyc07g054370.2.1 -1.74661 2.633149 1.463537 F-box/LRR-repeat protein At3g59200
Signalling Receptor kinases solyc12g005620.1.1 1.813059 1.988114 1.028337 LRR receptor-like serine/threonine-protein kinase,RLP
  solyc06g069740.1. 1.354104 1.251148 -2.06553 Calmodulin-like protein
Calcium solyc03g083320.2.1 -1.11983 -1.18853 1.489756 Calcineurin B-like calcium binding protein
  solyc01g097420.1.1 1.390368 1.531115 -1.73009 Calcuim ATPase
G-proteins solyc03g078570.2.1 -1.35177 1.730895 1.078512 Ras-related protein Rab-6A
Transport Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein solyc06g054070.2.1 -1.12655 -1.38876 -1.27683 Non-specific lipid-transfer protein
Sugars solyc03g113210.2.1 -2.97781 -10.8452 1.643367 Porin/voltage-dependent anion-selective channel protein
Not assigned Unknown solyco1g104720.2.1 -3.27322 -3.93722 -2.36617 Unknown Protein
solyc07g009020.1.1 -2.17045 -4.1934 -1.14893 Unknown Protein
solyc08g078920.1.1 -1.1221 -1.43749 -1.25381 Proline-rich Protein
solyc12g049140.1.1 -2.16278 -3.50997 -2.2489 Extensin-like protein Ext1
solyc06g051500.2.1 -1.31051 3.08695 2.375988 Unknown Protein
solyc07g008980.2.1 -3.19664 -3.89496 -1.52861 Unknown Protein
solyc07g009030.2.1 -2.28689 -3.72919 -1.38264 Unknown Protein
solyc07g032170.2.1 -1.37989 2.61237 1.682212 Abhydrolase domain- containing protein 5
  solyc04g015700.1.1 -1.09406 -2.77071 -1.14691 Unknown Protein
solyc05g009580.2.1 -1.41924 -1.0847 -1.80119 Aluminum-activated malate transporter-like
solyc12g014120.1.1 -1.51214 1.122747 1.442261 Unknown Protein
solyc09g097770.2.1 1.242743 1.587252 1.011286 Cell wall protein
solyc03g078580.2.1 -1.2353 1.865868 1.701912 Unknown Protein
solyc06g005210.1.1 2.124099 1.102057 1.169745 Cytochrome P450 like_TBP
solyc01g097690.2.1 -1.95437 -3.72554 -1.10791 Extensin-like protien Dif54
  1. Gene ID numbers along with log2 values at each time point before and after inoculation are indicated. All genes were considered to be differentially expressed with a threshold q-value < 0.05.
  2. Gene ID number along with log2 values at each time point before and after inoculation are indicated. All genes were considered DEGs with a cutoff q-value < 0.05.