Skip to main content

Table 3 KEGG pathways of DEGs in different comparisons

From: Global gene expression patterns of grass carp following compensatory growth

KEGG term E-1-M/C-1-M E-1-L/C-1-L E-2-M/C-2-M E-2-L/C-2-L E-2-M/E-1-M E-2-L/E-1-L
Metabolic pathways 331 242    372 284
Carbon metabolism 51 30 10 8 50 36
Fatty acid metabolism 26 17    26 18
Glycine, serine and threonine metabolism 24 17 5   30 20
Citrate cycle (TCA cycle) 22 11 48   18  
Biosynthesis of amino acids 37 22 9   43 24
Glyoxylate and dicarboxylate metabolism 15     16 11
Glycolysis/Gluconeogenesis 26 18     
Biosynthesis of unsaturated fatty acids 11 9     9
Steroid biosynthesis 10 13    13  
Terpenoid backbone biosynthesis 11 11 4    12
Selenocompound metabolism 8 9    9 8
2-Oxocarboxylic acid metabolism 10     13  
Fructose and mannose metabolism 18      
Cysteine and methionine metabolism 16 13 6   23  
Amino sugar and nucleotide sugar metabolism   21     21
N-Glycan biosynthesis   17     17
Glycerophospholipid metabolism   23     26
Arginine and proline metabolism   18    30 21
Starch and sucrose metabolism   13     14
Pyruvate metabolism   13    22 14
Pentose phosphate pathway   10     
One carbon pool by folate 9 7    11 7
Porphyrin and chlorophyll metabolism    7    12
Pyrimidine metabolism    9   47  
Propanoate metabolism      19  
Phenylalanine metabolism       7
Ubiquinone and other terpenoid-quinone biosynthesis       5
Valine, leucine and isoleucine degradation      22  
Protein processing in endoplasmic reticulum 53 41    67 56
DNA replication 20   6   31 13
Proteasome 22 19     22
Aminoacyl-tRNA biosynthesis   20 7 7   22
Ribosome biogenesis in eukaryotes    12 7 36  
RNA transport      68  
Mismatch repair      16  
Spliceosome      55  
Protein export      14  
Nucleotide excision repair      23  
Homologous recombination      15  
Base excision repair      16  
ECM-receptor interaction 33     36  
Cell cycle 47     58 33
Peroxisome       23