Table 1 Summary of read numbers based on the RNA-Seq data from the pericarp of litchi (cv. Nuomici) during the green, yellow and red stages of maturation
Summary | Green | Yellow | Red |
|---|---|---|---|
Total reads | 6,102,035 | 5,859,401 | 6,118,442 |
Q20 Percentage | 96.8% | 96.2% | 96.9% |
Total mapped reads | 4,729,816 | 4,298,029 | 5,049,453 |
Total mapped reads/total clean reads | 78% | 73% | 83% |
Perfect match | 3,005,300 | 2,693,246 | 3,358,974 |
Perfect match reads/total clean reads | 49% | 46% | 55% |
≤2 bp Mismatch | 1,724,516 | 1,604,783 | 1,690,479 |
≤2 bp Mismatch reads/total clean reads | 28% | 27% | 28% |
Unique match | 3,617,316 | 3,170,908 | 4,128,578 |
Unique match reads/total clean reads | 59% | 54% | 68% |
Multi-position match | 1,112,500 | 1,127,121 | 920,875 |
Multi-position match reads/total clean reads | 18% | 19% | 15% |
Total unmapped reads | 1,372,219 | 1,561,372 | 1,068,989 |
Total unmapped reads/total clean reads | 23% | 27% | 18% |