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Table 1 Summary of read numbers based on the RNA-Seq data from the pericarp of litchi (cv. Nuomici) during the green, yellow and red stages of maturation

From: Transcriptomic analysis of Litchi chinensis pericarp during maturation with a focus on chlorophyll degradation and flavonoid biosynthesis

Summary Green Yellow Red
Total reads 6,102,035 5,859,401 6,118,442
Q20 Percentage 96.8% 96.2% 96.9%
Total mapped reads 4,729,816 4,298,029 5,049,453
Total mapped reads/total clean reads 78% 73% 83%
Perfect match 3,005,300 2,693,246 3,358,974
Perfect match reads/total clean reads 49% 46% 55%
≤2 bp Mismatch 1,724,516 1,604,783 1,690,479
≤2 bp Mismatch reads/total clean reads 28% 27% 28%
Unique match 3,617,316 3,170,908 4,128,578
Unique match reads/total clean reads 59% 54% 68%
Multi-position match 1,112,500 1,127,121 920,875
Multi-position match reads/total clean reads 18% 19% 15%
Total unmapped reads 1,372,219 1,561,372 1,068,989
Total unmapped reads/total clean reads 23% 27% 18%