Table 3 Compositional and statistical summary of SEATS metagenomes
From: Prokaryotic assemblages and metagenomes in pelagic zones of the South China Sea
Characteristics | 10 m | 100 m | 1000 m | 3000 m |
|---|---|---|---|---|
Total reads | 228154 | 270377 | 248730 | 222911 |
Total read length (bp) | 52534435 | 63904461 | 58780946 | 51977555 |
Average read length (bp) | 230 | 236 | 236 | 233 |
Total contigs | 15914 | 24881 | 21425 | 23057 |
Total contig length (bp) | 3590518 | 5694438 | 6496827 | 5425432 |
Total reads on contig | 47099 | 77074 | 144516 | 81612 |
Average coverage per contig | 3.02x | 3.19x | 5.25x | 3.50x |
% G + C of contigs | 37.6 | 39.7 | 46.3 | 47.0 |
Total ORFs | 14346 | 22888 | 21362 | 20006 |
% eggNOG hits (e ≤10−5) | 64.5 | 58.9 | 60.1 | 62.0 |
% eggNOG hits (e ≤10−5, bits ≥100) | 29.4 | 22.1 | 30.1 | 26.4 |
Average genome size ± sd (Mbp) | 1.72 ± 0.01 | 1.84 ± 0.03 | 3.95 ± 0.03 | 3.42 ± 0.03 |