Skip to main content

Advertisement

Table 3 Overview of the functions enriched in the genomes of lactic acid bacteria (LAB) of beer origin compared to those of LAB not originating from beer (based on IMG-ER)

From: Comparative genome analysis of Pediococcus damnosus LMG 28219, a strain well-adapted to the beer environment

   No beer origin Beer origin
COG Name L. delbrueckii bulgaricus ATCC 11842 P. acidilactici 7_4 P. acidilactici DSM 20284 P. acidilactici MA 18/5 M P. acidilactici NGRI 0510Q P. pentosaceus ATCC 25745 P. pentosaceus IE-3 P. claussenii ATCC BAA-344 T P. damnosus LMG 28219 L. malefermentans KCTC 3548 L. rhamnosus ATCC 8530
COG2814 Arabinose efflux permease 8 18 19 18 19 16 16 22 24 23 26
COG1309 Transcriptional regulator 2 4 4 4 7 5 7 23 14 13 16
COG0789 Predicted transcriptional regulator 2 6 5 6 5 5 4 8 12 9 6
COG2826 Transposase and inactivated derivatives, IS30 family 4 0 1 1 1 1 2 4 12 10 4
COG1846 Transcriptional regulator 1 5 5 5 6 6 7 10 11 16 9
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 3 2 2 2 3 2 2 4 8 4 8
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 5 5 5 5 5 5 5 7 8 6 12
  1. The number of CDSs in the different COGs are listed in the table. T: type strain, P. Pediococcus, L. Lactobacillus, CDS: coding sequence, IS: insertion sequence.