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Table 1 RNA-seq raw data and number of differentially expressed transcripts

From: Transcriptional profile of sweet orange in response to chitosan and salicylic acid

Treatment Number of reads CG (%) Q (20%) Transcripts with changed expression §
CHI 11,691,216 43.39 92.68 640
H* 13,253,654 43.36 92.56 -
SA 14,833,464 43.35 93.92 1,425
E* 12,279,260 43.64 92.34 -
  1. *H and E represent the controls for CHI and SA, respectively.
  2. CG represents the quantity of CG bases in the sequences.
  3. Corresponds to sequences with Phred quality > 20, which was higher than 92% for all RNA-seq libraries.
  4. §Statistical significance (P ≤ 0.05).
  5. All transcripts (up- and down-regulated) were obtained by RNA-seq after treatment with elicitors when compared to controls, according to Cuffdiff analysis.