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Table 1 Distribution of lodA -like genes in microbial genome sequences deposited with IMG database as of January 2014

From: Distribution in microbial genomes of genes similar to lodA and goxA which encode a novel family of quinoproteins with amino acid oxidase activity

Taxon Genomes with lodA -like genes Percentage
01 Archaea (602) 0 <0.16
01 Bacteria (14983) 1 140 0.94
 02 Acidobacteria (34) 1 2.94
 02 Actinobacteria (1401) 13 0.93
 02 Bacteroidetes (598) 11 1.83
 02 Chloroflexi (90) 2 2.22
 02 Cyanobacteria (313) 9 2.88
 02 Firmicutes (3658) 1 0.03
 03 Bacilli (2695) 1 0.04
 04 Bacillales (1103) 1 0.09
 04 Lactobacillales (1592) 0 <0.06
 03 Clostridia (799) 0 <0.13
 03 Erysipelotrichia (33) 0 <3.03
 03 Negativicutes (86) 0 <1.16
 03 unclassified (45) 0 <2.22
 02 Planctomycetes (40) 3 7.50
 02 Proteobacteria (7187) 100 1.39
 03 Alphaproteobacteria (1233) 37 3.00
 03 Betaproteobacteria (774) 19 2.45
 03 Deltaproteobacteria (183) 3 1.64
 03 Epsilonproteobacteria (469) 0 <0.21
 03 Gammaproteobacteria (4466) 41 0.92
 03 Zetaproteobacteria (19) 0 <5.26
 03 unclassified (43) 0 <2.33
 01 Eukarya (203) 2 4 1.97
 02 Basidiomycota (15) 4 26.66
  1. The numbers in brackets indicate the number of genomes sequenced in each taxon. The number before each taxon is 01 for Domain, 02 for Phylum, 03 for Class and 04 for Order.
  2. 1Phyla among Bacteria without lodA-like genes: Aquificae (22), Armatimonadetes (9), Atribacteria (1), Caldiserica (2), Candidatus Saccharibacteria (5), Chlamydiae (100), Chlorobi (25), Chrysiogenetes (2), Deferribacteres (7), Deinococcus-Thermus (43), Dictyoglomi (2), Elusimicrobia (3), Fibrobacteres (9), Fusobacteria (47), Gemmatimonadetes (8), Lentisphaerae (3), Nitrospinae (1), Nitrospirae (19), Poribacteria (11), Spirochaetes (414), Synergistetes (20), Tenericutes (146), Thermodesulfobacteria (6), Thermotogae (40), Verrucomicrobia (34), Candidate division CD12 (1), Candidate division EM 3 (2), unclassified (680).
  3. 2Phyla among Eukarya without lodA-like genes: Apicomplexa (12), Ascomycota (77), Bacillariophyta (2), Blastocladiomycota (1), Chlorophyta (8) Chytridiomycota (2), Microsporidia (5), Neocallimastigomycota (4), unclassified (26).