Skip to main content

Table 1 Variant frequency thresholds

From: Distinguishing low frequency mutations from RT-PCR and sequence errors in viral deep sequencing data

 

25%

50%

75%

95%

100%

Seq

0.0119%

0.0183%

0.0268%

0.0466%

0.276%

PCR-Low

0.0261%

0.0371%

0.0518%

0.0793%

0.4074%

PCR-High

0.0323%

0.0457%

0.0623%

0.1004%

0.3755%

RT-PCR

0.0368%

0.0526%

0.0793%

0.1403%

0.6571%

Real

0.0309%

0.0510%

0.0916%

0.2113%

100%

  1. This table contains the 25th, median 50th, 75th, 95th and the maximum 100th percentiles of genome position mismatch frequencies in each of the four samples.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us