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Table 3 Genes up-regulated in both F97 and F118 accessions upon R. solanacearum infection

From: Transcriptome responses to Ralstonia solanacearum infection in the roots of the wild potato Solanum commersonii

Gene name

Annotation

F118 log(inoc/ctr)

F97 log(inoc/ctr)

Pathogen-responsive proteins

PGSC0003DMG401010492

Acidic class II 1,3-beta-glucanase

3,03

2,45

PGSC0003DMG400010491

Glucan endo-1,3-beta-D-glucosidase

3,86

3,71

PGSC0003DMG400010490

Acidic class II 1,3-beta-glucanase

2,97

2,39

PGSC0003DMG400029830

Glucan endo-1,3-beta-D-glucosidase

2,70

3,08

PGSC0003DMG400019437

Pathogen-and wound-inducible antifungal protein CBP20

2,74

3,79

PGSC0003DMG400044171

P69E protein

2,61

2,44

PGSC0003DMG400045235

P69E protein

2,72

2,35

PGSC0003DMG401003937

P69B protein

2,74

2,05

PGSC0003DMG400003939

Serine protease

2,36

2,12

PGSC0003DMG400030731

Metallocarboxypeptidase inhibitor

2,87

2,79

Genes related to auxin metabolism

PGSC0003DMG401028570

Phosphoglycerate/bisphosphoglycerate mutase family protein

3,10

2,42

PGSC0003DMG402028570

Phosphoglycerate/bisphosphoglycerate mutase

3,12

2,41

PGSC0003DMG400021406

Phytosulfokine peptide

2,97

2,25

PGSC0003DMG400024978

Indole-3-acetic acid-amido synthetase GH3.3

2,02

2,14

Genes related to cell death or plant defense

PGSC0003DMG400002029

Cytoplasmic small heat shock protein class I

2,98

3,55

PGSC0003DMG400002028

Cytoplasmic small heat shock protein class I

2,98

3,55

PGSC0003DMG400002027

Cytoplasmic small heat shock protein class I

2,98

3,55

PGSC0003DMG400019956

Glutathione s-transferase

2,75

3,26

PGSC0003DMG400010798

Staygreen protein

2,78

2,11

PGSC0003DMG400017713

LRR receptor-like serine/threonine-protein kinase

2,68

2,02

PGSC0003DMG400012992

Receptor protein kinase

3,13

2,73

PGSC0003DMG400031325

Nectarin 5

2,50

2,98

Unknown function & putative proteins

PGSC0003DMG400002772

Conserved gene of unknown function

2,59

4,59

PGSC0003DMG400007526

Conserved gene of unknown function

3,44

2,11

PGSC0003DMG400031326

Conserved gene of unknown function

3.74

2,96

PGSC0003DMG400016493

Gene of unknown function

2,46

3,60

PGSC0003DMG400016351

Conserved gene of unknown function

2,68

2,99

PGSC0003DMG400011404

Gene of unknown function

2,24

3,71

Genes with uncertain function

PGSC0003DMG400026590

Major pollen allergen Ory s 1

4,92

2,34

PGSC0003DMG400027031

Hydrogen peroxide-induced 1

3,06

3,03

PGSC0003DMG400011226

Sodium/potassium/calcium exchanger 6

3,10

3,13

sci_locus_30986_iso_1_len_1653_ver_2

Trypsin and protease inhibitor

2,99

2,89

PGSC0003DMG400012987

Threonine dehydratase biosynthetic, chloroplastic

6,88

4,67

PGSC0003DMG400004690

Metal ion binding protein

4,68

3,75

  1. log(inoc/ctr) stands for logarithm of FPKM in inoculated divided by FPKM in non-inoculated roots.
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BMC Genomics

ISSN: 1471-2164

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