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Table 2 Descriptive statistics on genomes

From: Extensive intra-phylotype diversity in lactobacilli and bifidobacteria from the honeybee gut

Strain/species Genome size 1 (bp) Plasmids Total plasmid size (bp) Phage regions GC content # of CDS 2 Mean gene size (bp) 3 rRNA (5S, 16S, 23S) tRNA Pseudo-genes Partial CDS 4 # Unique genes 5
Bma6 1738065 None NA None 61 1327 1146 multiple 46 7 11 78
Bin2 2087605 None NA 1 61 1569 1159 multiple 45 8 14 45
Bin7 2120336 None NA 1 61 1576 1172 multiple 45 19 2 49
Hma3 2217062 2 15107 1 60 1672 1161 multiple 46 18 7 44
L. apis 1542091 1 137911 None 37 1498 964 multiple 49 14 10 180
L. helsingborgensis 1868619 1 123906 None 36 1730 986 multiple 49 20 18 198
L. melliventris 1956081 2 144786 1 36 1891 961 multiple 50 22 12 213
L. kimbladii 2130297 2 15247 1 36 1872 982 multiple 50 22 19 225
L. kullabergensis 2079016 None NA 2 36 1844 975 multiple 50 21 21 199
L. mellis 1790038 None NA 1 37 1572 976 multiple 53 18 7 258
L. mellifer 1681465 2 104625 2 39 1568 967 multiple 49 21 24 254
  1. 1Total size of contigs larger than 500 bp, excluding contigs annotated as plamids.
  2. 2CDS, excluding pseudogenes and partial genes.
  3. 3CDS (excluding pseudogenes and partial genes) divided by total length.
  4. 4CDS overlapping a contig border.
  5. 5Genes larger than 300 bp with no significant blast-hits found during annotation.