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Table 1 Summary of Illumina sequencing and assembly of P. notoginseng

From: Transcriptome analysis of leaves, roots and flowers of Panax notoginseng identifies genes involved in ginsenoside and alkaloid biosynthesis

  Leaves Roots Flowers Three tissues together
Number of HQ reads 65,041,040 65,258,974 68,125,310 198,425,324
Length of HQ reads (bp) 5,853,693,600 5,873,307,660 6,131,277,900 17,858,279,160
Number of contigs 167,954 140,265 184,389 205,000
Length of contigs (bp) 56,302,711 48,125,902 60,389,472 160,205,000
Average length of contigs (bp) 335 343 328 781
N50 of contigs (bp) 537 606 539 1,218
Number of unigene* 128,665 94,258 124,888 107,340
Length of unigene (bp) 76,176,975 60,684,037 92,995,924 111,620,756
Average length of unigene (bp) 592 644 745 1,039
N50 of unigene (bp) 912 1,025 1,232 1,526
Number of clusters 50,984 37,727 54,977 76,938
Number of singletons 77,681 56,531 69,911 30,402
  1. *Total number of clusters and singletons.
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