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Table 4 Family and sub-family gene distribution

From: Identification and characterization of cichlid TAAR genes and comparison with other teleost TAAR repertoires

  

Cichlids

Fish models

 
  

N. bri.

N. bur.

P. nye.

O. nil.

M. zeb.

G. acu.

O. Lat.

T. rub.

T. nig.

D. rer.

 

CLASS III

A1

6 s(6e,1p)

12 s(2e,3p,2f)

11 s(5e,1f)

29 s(7e,2p,2sp)

11 s(1e,2ep1fs,3p)

1 s

11 s

    

CLASS III

A2

2 s(1e,1ep)

6 s

3 s(2e,1p)

6 s(3e,1es,1p)

3 s(3e)

42 s

5 s

    

CLASS III

A3

1 s(1e)

1 s(1e)

1 s(1 sp)

(1p)

1(1e)

      

CLASS III

A4

(1e)

1 s

(1f)

(1f)

1 s

 

4 s

    

CLASS III

A5

1

1

1

1

1

1

     

CLASS III

A6

1 (2e)

1 (1e)

1 (1p)

4 (1e)

2

1

1

2

   

CLASS III

A7

       

2 s

8 s

  

CLASS III

C

         

10

Group III

CLASS III

D

         

64

Group V, VI & VII

CLASS III

E

         

1

 

CLASS I

B1

1 (1e)

  

4 (1e)

 

4

5

1

3

  

CLASS I

B2

(1e)

1

1

(2p)

1

      

CLASS I

B3

      

1

 

2

  

CLASS I

B4

     

1

 

7

   

CLASS I

B5

         

5

Group I

CLASS I

B6

         

2

Group I

CLASS II

F

         

16

Group XII & XIV

 

Total

12 (13e,2p)

23 (4e,3p,2f)

18 (7e,3p,2f)

44 (13e,8p,1f)

20 (5e,5p,1f)

50

27

12

13

98

 
  1. Distribution of TAAR genes, pseudogenes and edge genes identified in the five cichlids and the other five model fishes (Table 1), between the various families and subfamilies. The left column shows the corresponding classes (I to III) defined by Hussain et al. [16] and the right column shows groups I to XIV defined by Gloriam et al. [43]. Lower case letters e, f, p and s are for edge, fragment, pseudo and spliced gene, respectively.
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BMC Genomics

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