Figure 8
Correlation between the CTCF signal and the HM or TF signal. The results are shown for several cell lines annotated using CAGE from different subcellular locations (indicated by the left column). The genes were subdivided into genes with a well-positioned CTCF peak upstream of the TSS and those without (‘CTCF’ and ‘Non-CTCF’, respectively). The CTCF signal was computed for the whole region ±1 kb from the TSS, whereas the HM and TF signals (name and ENCODE lab specified to the right) were subdivided into the signal upstream and downstream of the TSS. The correlation between the total CTCF signal and the HM or TF signal up- and downstream of the TSS is shown on a scale from dark red (high negative correlation), to white (no correlation), to dark blue (high positive correlation).