Skip to main content

Table 2 List of genes encoded in C. impatiens and C. resedifolia plastomes

From: Plastome organization and evolution of chloroplast genes in Cardamine species adapted to contrasting habitats

Gene Category

Genes

ribosomal RNAS

§ rrn4.5, § rrn5, § rrn16, § rrn23

transfer RNAs

§ *trnA-UGC, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, *trnG-UCC, trnG-UCC, trnH-GUG, § trnI-CAU, § *trnI-GAU, *trnK-UUU, § trnL-CAA, *trnL-UAA, trnL-UAG, trnM-CAU, § trnN-GUU, trnP-UGG, trnQ-UUG, § trnR-ACG, trnR-UCU, trnS-GCU, trnS-UGA, trnS-GGA, trnT-UGU, trnT-GGU, *trnV-UAC, § trnV-GAC, trnW-CCA, trnY-GUA

Photosystem I

psaA, psaB, psaC, psaI, psaJ

Photosystem II

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ

Cytochrome

petA, *petB, *petD, petG, petL, petN

ATP synthase

atpA, atpB, atpE, *atpF, atpH, atpI

Rubisco

rbcL

NADH dehydrogenase

*ndhA, § *ndhB, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK

Ribosomal protein (large subunit)

§ *rpl2, rpl14, *rpl16, rpl20, rpl22, § rpl23, rpl32, rpl33, rpl36

Ribosomal protein (small subunit)

rps2, rps3, rps4, § rps7, rps8, rps11, § *rps12, rps14, rps15, *rps16, rps18, rps19

RNA polymerase

rpoA, rpoB, *rpoC1, rpoC2

ATP-dependent protease

*clpP

Cytochrome c biogenesis

ccsA

Membrane protein

cemA

Maturase

matK

Conserved reading frames

ycf1_short, ycf1_long, § ycf2, *ycf3, ycf4

  1. §Gene completely duplicated in the inverted repeat. *Gene with intron(s).