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Table 3 The number of recovered conserved orthologs found in each of the four de novo Plodia interpunctella transcriptomes

From: Novel insights into the insect trancriptome response to a natural DNA virus

  SOAP kmer25 SOAP kmer31 Trinity 0.05 Trinity 0.16
Number of copies Original USearch Original USearch Original USearch Original USearch
0 28 28 26 26 21 21 21 21
1 153 180 174 205 175 209 191 216
2 104 103 91 89 83 90 85 90
3 37 25 35 18 27 16 23 13
4 16 13 17 12 19 11 15 8
5 or more 19 8 14 7 32 10 22 9
  1. The search was conducted on N=357 ultra-conserved orthologs. A count is given for the orginal transcriptome build and for the build after clustering with USearch.