Skip to main content

Table 3 The number of recovered conserved orthologs found in each of the four de novo Plodia interpunctella transcriptomes

From: Novel insights into the insect trancriptome response to a natural DNA virus

 

SOAP kmer25

SOAP kmer31

Trinity 0.05

Trinity 0.16

Number of copies

Original

USearch

Original

USearch

Original

USearch

Original

USearch

0

28

28

26

26

21

21

21

21

1

153

180

174

205

175

209

191

216

2

104

103

91

89

83

90

85

90

3

37

25

35

18

27

16

23

13

4

16

13

17

12

19

11

15

8

5 or more

19

8

14

7

32

10

22

9

  1. The search was conducted on N=357 ultra-conserved orthologs. A count is given for the orginal transcriptome build and for the build after clustering with USearch.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us