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Table 1 Genes defined as sexually dimorphic from eight-cell embryos

From: Sexually dimorphic gene expression emerges with embryonic genome activation and is dynamic throughout development

Gene name CHR Start End Strand baseMean log2FoldChange
Xist chrX 103460373 103483233 - 275.66 −9.01
Ube1y1 chrY 818713 844224 + 232.95 9.02
Ddx3y chrY 1260715 1286613 - 153.51 8.49
Bex1 chrX 136213972 136215513 - 168.51 −6.46
B230206F22Rik chrX 103560910 103623754 - 34.38 −6.73
Sms chrX 157443954 157492046 - 6792.54 −1.32
Eif2s3y chrY 1010612 1028598 + 224.03 5.94
Rbm3 chrX 8138975 8145802 - 3756.52 −1.06
Fthl17 chrX 9033486 9034333 + 18.80 −5.67
Huwe1 chrX 151803282 151935417 + 2245.04 −0.81
Hprt chrX 52988078 53021660 + 16923.45 −1.10
Eif2s3x chrX 94188709 94212651 - 3306.76 −0.81
Syap1 chrX 162856843 162888462 - 2009.79 −1.13
Yy2 chrX 157566119 157568985 - 237.80 −2.07
Eif1ax chrX 159372195 159385699 + 1826.30 −1.01
Ccng1 chr11 40748552 40755286 - 403.37 1.88
D7Ertd715e chr7 59969577 59974431 - 365.59 −1.63
Atp6ap2 chrX 12587759 12617051 + 1103.98 −1.02
Uba1 chrX 20658421 20683179 + 4718.65 −0.82
Ddx3x chrX 13281022 13293983 + 4503.61 −0.96
Timm8a1 chrX 134537258 134541629 - 3804.40 −1.20
Tsr2 chrX 151087094 151096543 - 2495.42 −0.76
Med14 chrX 12675371 12761973 - 725.57 −1.36
Usp38 chr8 80980733 81014906 - 1115.47 −0.99
Rhox5 chrX 37754608 37808878 + 27.14 −3.92
Gnl3l chrX 150983133 151017322 - 910.96 −0.74
Kdm6a chrX 18162667 18279358 + 481.77 −0.98
Als2cr11 chr1 59050506 59094900 - 9.24 4.02
Aen chr7 78895927 78908833 + 513.62 0.99
Bcap31 chrX 73686183 73716175 - 1554.31 −0.63
Rbbp7 chrX 162760372 162779090 + 4036.08 −0.81
Acsl4 chrX 142317993 142390535 - 1262.01 −1.08
Idh3g chrX 73778963 73786897 - 2177.00 −0.71
Lamp2 chrX 38405064 38456455 - 1278.91 −1.03
Rbmx chrX 57383348 57393036 - 321.01 −0.91
Porcn chrX 8193850 8206525 - 303.00 −1.11
Ssr4 chrX 73787028 73790828 + 798.15 −0.82
Otud5 chrX 7841831 7874858 + 728.02 −0.71
1810030O07Rik chrX 12654884 12673546 - 134.89 −1.85
Atrx chrX 105797615 105929372 - 707.08 −0.85
Prps1 chrX 140456603 140476140 + 8178.23 −0.77
Aifm1 chrX 48474944 48513426 - 387.98 −1.18
Gm14511 chrX 8975712 8976559 - 31.79 −3.30
Mapkapk2 chr1 131053704 131097543 - 46.62 2.72
Wdr45 chrX 7722249 7728201 + 2311.35 −0.85
Cox7b chrX 106015700 106022450 + 116.54 −1.37
Mad2l1bp chr17 46147385 46153551 - 1191.38 −0.92
Tmem56 chr3 121202010 121263316 - 542.41 −1.12
Rpl10 chrX 74270816 74273135 + 14774.94 −0.80
Cybasc3 chr19 10577723 10589830 + 465.93 0.85
Mtf1 chr4 124802549 124849800 + 512.08 −0.75
Cks2 chr13 51645232 51650662 + 2503.02 −0.66
Gm14458 chrX 8985900 8986755 - 5.13 −3.53
Cdca7 chr2 72476219 72486890 + 867.49 0.67
Pgrmc1 chrX 36598225 36606079 + 414.68 −1.00
Thoc2 chrX 41794994 41911901 - 381.21 −1.06
Cited1 chrX 102247440 102251769 - 3344.44 −0.53
Ypel5 chr17 72836704 72851195 + 2403.16 −0.70
Cdk16 chrX 20688493 20699877 + 802.78 −0.70
Dnajc28 chr16 91614257 91618999 - 10.24 3.47
Fmr1 chrX 68678555 68717961 + 587.22 −1.20
Gla chrX 134588169 134601005 - 476.84 −1.06
Hnrnph2 chrX 134601286 134607054 + 879.15 −0.74
Mpp1 chrX 75109733 75130949 - 430.95 −1.07
Msl3 chrX 168654118 168673902 - 355.99 −1.12
Tbc1d25 chrX 8154472 8176181 - 258.99 −1.15
Trappc1 chr11 69323986 69325793 + 118.07 1.26
Utp14a chrX 48256934 48282449 + 619.81 −0.73
Xiap chrX 42067836 42109664 + 449.57 −0.86
  1. Dimorphic genes were defined from RNA-seq data generated from 6 male and 6 female eight-cell embryos (adjusted p-value < 0.1, (Benjamini-Hochberg correction) and −0.5 < log2(male/female) > 0.5). TSS = transcriptional start site.