Figure 3
Haplotype analysis at Rhg1 and Rhg4 loci using Soy50k SNP Infinium chip data. Twenty-seven soybean plant introductions and nine cultivars, Woodruff, Hartwig, Boggs, Gordon, Bryan, G00-3880, Prichard, Bedford and Carver were used. A. Haplotype analysis at Rhg1 locus. SNPs alleles at the Rhg1 region on Chr18 were compared to Peking and PI 88788, respectively. A 788 kbp region (Coordinate of 1,266,210-2,054,952 on Chr18 based on Gmax_275_v2.0.softmasked) consisting of 82 SNPs is shown in the graph. B. Haplotype analysis at Rhg4 locus. SNPs alleles at the Rhg4 region on Chr08 were compared to Peking. A 1.5Mbp region (Coordinate of 6,903,359-8,399,514 on Chr08 based on Gmax_275_v2.0. softmasked) consisting of 82 SNPs is shown here. The reference line is shown in dark red. Red squares represent same alleles as the reference and green squares represent alleles that are different from the reference. The position of the locus and the resistance types are as indicated.