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Table 1 Haplotype alleles at Rhg1 and Rhg4 loci and source identification in 27 soybean lines ‡

From: SNP identification and marker assay development for high-throughput selection of soybean cyst nematode resistance

Name

Markers at Rhg1 locus

Marker at Rhg4 locus

Reaction to SCN Race 3

Resistance type

GSM381 (Gm18: 1645407) †

GSM383 (Gm18: 1643660)

GSM191 (Gm08: 8361148)

PI548655 (Forrest)

G

G

G

R

Peking

PI548402 (Peking)

G

G

G

R

Peking

PI89772

G

G

G

R

Peking

PI90763

G

G

G

R

Peking

PI437654

G

G

G

R

Peking

PI548316

G

C

C

R

PI 88788

PI88788

G

C

C

R

PI 88788

PI209332

G

C

C

R

PI 88788

PI603372

G

C

C

R

PI 88788

PI603587A

G

C

C

R

PI 88788

PI603384

G

C

C

S

susceptible

PI97094

G

C

C

S

susceptible

PI548667

T

C

C

S

susceptible

PI518671 (Williams 82)

T

C

C

S

susceptible

PI567359

T

C

C

S

susceptible

PI567368

T

C

C

S

susceptible

PI567481

T

C

C

S

susceptible

PI602991

T

C

C

S

susceptible

PI603357

T

C

C

S

susceptible

PI603420

T

C

C

S

susceptible

PI603428C

T

C

C

S

susceptible

PI603502A

T

C

C

S

susceptible

PI603656

T

C

C

S

susceptible

PI567568B

T

C

C

S

susceptible

PI587993

T

C

C

S

susceptible

PI594770A

T

C

C

S

susceptible

PI594773

T

C

C

S

susceptible

  1. ‡Lines were used by Cook et al. [12] and Liu et al. [14].
  2. †Numbers represent the genome coordinate based on the Database: Gmax_275_v2.0.softmasked.
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BMC Genomics

ISSN: 1471-2164

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