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Table 1 Summary of TSSs and TTSs identified from a single RNA-seq library

From: An empirical strategy to detect bacterial transcript structure from directional RNA-seq transcriptome data

Type

TSS

TTS

Number (%) 1

Consistency 3

Number (%) 1

Consistency 3

Type 1

206 ± 88 (22.9 ± 4.4)

88.8 ± 8.6%

85 ± 47 (10.6 ± 2.8)

70.2 ± 16.4%

Type 2

610 ± 323 (66.9 ± 3.6)

78.1 ± 8.6%

656 ± 370 (81.0 ± 3.6)

58.2 ± 15.6%

Type 3-5

68 ± 28 (7.2 ± 2.4)

91.4 ± 10.5%

46 ± 33 (5.7 ± 1.5)

85.0 ± 18.3%

Type 6

30 ± 20 (3.0 ± 2.4)

96.9 ± 9.8%

24 ± 30 (2.8 ± 1.9)

96.3% ± 12.8%

Total

914 ± 493 (17.2 ± 9.3)2

82.0 ± 7.7%

812 ± 470 (15.3 ± 8.8)2

61.3 ± 14.4%

  1. Note: 1The 95% confidence limits (mean ± 1.96SD) of the number or percentages of TSSs/TTSs identified from a single library were represented. For Type 1, 2, 3–5, and 6, the percentages of respective type(s) from total number of TSSs/TTSs are given.
  2. 2The percentages of S. Typhimurium 14028s chromosome-encoding genes represented by the total identified TSSs/TTSs were given.
  3. 3The percentages of TSSs/TTSs (individual types or total) identified by both two independent libraries within ±50 nt errors among the total number of TSSs/TTSs identified by both libraries were given as 95% confidence limits.
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BMC Genomics

ISSN: 1471-2164

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