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Figure 6 | BMC Genomics

Figure 6

From: Identification and characterization of expressed retrotransposons in the genome of the Paracoccidioides species complex

Figure 6

Phylogenetic analysis of RtPc elements and related fungal retrotransposons. Phylogenetic tree of all intact RtPc elements using nucleotide sequences of the reverse transcriptase domain of P. brasiliensis (Pb 03 e Pb18) and P. lutzii (Pb01) with Bayesian inference. Trees were rooted with the other subfamilies. LTR elements from Aspergillus fumigatus (Gypsy-3-I_AF), Arthroderma otea (Gypsy-1-I_Ao), Ajellomyces capsulatus(AAJI01001759.1) Blumeria graminis (Copia-11_BG-I),Ajellomyces capsulatus (XM_001540167.1) and Blumeria graminis (Tad1-16-BG) were used as outgroups (see Method). A shows the phylogenetic tree of all 24 RtPc intact elements identified in Pb01, Pb03 and Pb18. LTR-Gypsy-RtPc1 and LINE-Tad-RtPc5 trees are shown with more detail in B and C, respectively.

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