Genomic features separating ten strains of Neorhizobium galegae with different symbiotic phenotypes

Österman, Janina; Mousavi, Seyed Abdollah; Koskinen, Patrik; Paulin, Lars; Lindström, Kristina

doi:10.1186/s12864-015-1576-3

BMC Genomics

Table 3 Genes contained in the symbiovar-specific ortholog groups

From: Genomic features separating ten strains of Neorhizobium galegae with different symbiotic phenotypes

Orientalis-specific genes		Officinalis-specific genes
HAMBI 540 ^T locus tag	Gene function	HAMBI 1141 locus tag	Gene function
PA12530	Pimelyl-[acyl-carrier protein] methyl ester esterase	CH10650	Mll9651 protein
PA13300	Drug resistance transporter, EmrB/QacA subfamily	CH10640	RES domain protein
PA12540	Hypothetical protein	CH06450	Hypothetical protein
PA14750	Helix-turn-helix protein, CopG	CH06440	Hypothetical protein
PA10390^c	Transposase IS4 family protein	PB00510^d	Hypothetical protein
PA11760	Putative dehydrogenase subunit	PB00490^d	Hypothetical protein
PA11750	Gluconate 2-dehydrogenase (Acceptor)	PB00470^d	Benzaldehyde dehydrogenase (NAD+)
PA11740	Transcriptional regulator, LysR family	PB00460^d	Sigma-54 interacting regulator, V4R domain-containing protein
PA11090	Hypothetical protein	PB00420^d	Transcriptional regulator
PA11000^a	Acyl-CoA synthetase	PB00410^d	Fumarate hydratase
PA10970^a	Endoribonuclease L-PSP	PB00400^d	Hypothetical protein
PA10920^a	Diaminopropionate ammonia-lyase	PB00390^d	Putative 3-methylaspartate ammonia-lyase, glutamate mutase
PA10900^a	Hippurate hydrolase	PB00380^d	3-alpha-hydroxysteroid dehydrogenase
PA10890^a	Hypothetical protein	PB00370^d	Steroid C27-monooxygenase
PA10880^a	Hypothetical protein	PB00360^d	Agmatinase
PA10870^a	Hypothetical protein	PB00350^d	Hypothetical protein
CH26260	Cupin domain protein	PB00340^d	4-aminobutyrate transaminase
CH26240	Flavodoxin	PB00330^d	Aldehyde dehydrogenase
PA13080	Transcriptional regulator SocA3	PB00300^d	Amino acid permease-associated region
PA13090	Glutathione S-transferase	PB00290^d	Hypothetical protein
CH08120	Carboxymuconolactone decarboxylase	PB00280^d	Cation/cationic drug transporter
PA04570	Hypothetical protein	PB00270^d	NADH dehydrogenase
PA10070^b	Hypothetical protein	PB00260^d	Transcriptional regulator, TetR family
PA10080^b	Hypothetical protein	PB00230^d	MFS transporter
PA14930	Transcriptional regulator, LysR family	PB00220^d	L-lysine exporter
PA14940	Glyoxalase family protein	PB00210^d	Transcriptional regulator, ArgP family
PA15010	Hypothetical protein	PB00950^c	Hypothetical protein
PA10270^b	Hypothetical protein	CH32360	Hypothetical protein
PA07580	Hypothetical protein
PA09750	Hypothetical protein
PA10640^c	Hypothetical protein
CH19720	Hypothetical protein
PA10760^a	Transposase IS116/IS110/IS902 family protein
PA10540^c	Hypothetical protein
CH11120	Antisigma-factor antagonist, STAS
CH43990	Hypothetical protein
PA07480	Putative nitrilase/cyanide hydratase family protein (Carbon-nitrogen hydrolase)
CH38090	Bacterial regulatory s, tetR family protein
CH38080	Hypothetical protein
CH38070	DoxX family protein

Locus tags of the closed genomes used as gene reference for the homologous genes. Gene functions according to a majority rule where discrepancy is found.
^aLocated within 30 genes downstream from nodE in HAMBI 540^T.
^bLocated within 30 genes downstream from noeT in HAMBI 540^T.
^cLocated within symbiosis gene region.
^dLocated withing 38 genes downstream from nodE in HAMBI 1141, i.e. within the extended symbiosis gene region.

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ISSN: 1471-2164

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