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Table 3 Genes contained in the symbiovar-specific ortholog groups

From: Genomic features separating ten strains of Neorhizobium galegae with different symbiotic phenotypes

Orientalis-specific genes Officinalis-specific genes
HAMBI 540 T locus tag Gene function HAMBI 1141 locus tag Gene function
PA12530 Pimelyl-[acyl-carrier protein] methyl ester esterase CH10650 Mll9651 protein
PA13300 Drug resistance transporter, EmrB/QacA subfamily CH10640 RES domain protein
PA12540 Hypothetical protein CH06450 Hypothetical protein
PA14750 Helix-turn-helix protein, CopG CH06440 Hypothetical protein
PA10390c Transposase IS4 family protein PB00510d Hypothetical protein
PA11760 Putative dehydrogenase subunit PB00490d Hypothetical protein
PA11750 Gluconate 2-dehydrogenase (Acceptor) PB00470d Benzaldehyde dehydrogenase (NAD+)
PA11740 Transcriptional regulator, LysR family PB00460d Sigma-54 interacting regulator, V4R domain-containing protein
PA11090 Hypothetical protein PB00420d Transcriptional regulator
PA11000a Acyl-CoA synthetase PB00410d Fumarate hydratase
PA10970a Endoribonuclease L-PSP PB00400d Hypothetical protein
PA10920a Diaminopropionate ammonia-lyase PB00390d Putative 3-methylaspartate ammonia-lyase, glutamate mutase
PA10900a Hippurate hydrolase PB00380d 3-alpha-hydroxysteroid dehydrogenase
PA10890a Hypothetical protein PB00370d Steroid C27-monooxygenase
PA10880a Hypothetical protein PB00360d Agmatinase
PA10870a Hypothetical protein PB00350d Hypothetical protein
CH26260 Cupin domain protein PB00340d 4-aminobutyrate transaminase
CH26240 Flavodoxin PB00330d Aldehyde dehydrogenase
PA13080 Transcriptional regulator SocA3 PB00300d Amino acid permease-associated region
PA13090 Glutathione S-transferase PB00290d Hypothetical protein
CH08120 Carboxymuconolactone decarboxylase PB00280d Cation/cationic drug transporter
PA04570 Hypothetical protein PB00270d NADH dehydrogenase
PA10070b Hypothetical protein PB00260d Transcriptional regulator, TetR family
PA10080b Hypothetical protein PB00230d MFS transporter
PA14930 Transcriptional regulator, LysR family PB00220d L-lysine exporter
PA14940 Glyoxalase family protein PB00210d Transcriptional regulator, ArgP family
PA15010 Hypothetical protein PB00950c Hypothetical protein
PA10270b Hypothetical protein CH32360 Hypothetical protein
PA07580 Hypothetical protein   
PA09750 Hypothetical protein   
PA10640c Hypothetical protein   
CH19720 Hypothetical protein   
PA10760a Transposase IS116/IS110/IS902 family protein   
PA10540c Hypothetical protein   
CH11120 Antisigma-factor antagonist, STAS   
CH43990 Hypothetical protein   
PA07480 Putative nitrilase/cyanide hydratase family protein (Carbon-nitrogen hydrolase)   
CH38090 Bacterial regulatory s, tetR family protein   
CH38080 Hypothetical protein   
CH38070 DoxX family protein   
  1. Locus tags of the closed genomes used as gene reference for the homologous genes. Gene functions according to a majority rule where discrepancy is found.
  2. aLocated within 30 genes downstream from nodE in HAMBI 540T.
  3. bLocated within 30 genes downstream from noeT in HAMBI 540T.
  4. cLocated within symbiosis gene region.
  5. dLocated withing 38 genes downstream from nodE in HAMBI 1141, i.e. within the extended symbiosis gene region.
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