Skip to main content

Table 5 Functionally important candidate genes showing daily and seasonal regulation

From: Neural transcriptome reveals molecular mechanisms for temporal control of vocalization across multiple timescales

Category

Cluster pattern

Blast2GO description

Neurotransmission

Peak-SNV

Anoctamin-10-like isoform x1

Peak-SNV

Anoctamin-10-like isoform x4

Peak-SNV

ATP-sensitive inward rectifier potassium channel 8-like

Peak-SNV

Calcium-activated potassium channel subunit alpha-1-like (kcnma1/Kca1.1) isoform x1

Peak-SNV

Calcium-activated potassium channel subunit alpha-1-like (kcnma1/Kca1.1) isoform x4

Peak-SNV

GABA receptor subunit pi-like (gabrp)

All-Summer

Gap junction alpha 1 (cx43)

VMN-Summer, Peak-SNV

Gap junction beta 6 (cx30)

VMN-Summer

Glutamate ionotropic kainate 4

All-Summer

Glycine receptor subunit beta

VMN-Summer

Glycine receptor subunit beta-like

VMN-Summer, Peak-SNV

Neuronal acetylcholine receptor subunit alpha-3-like

Peak-SNV

Neuronal acetylcholine receptor subunit beta-2-like (chrnb2)

All-Summer

Potassium voltage-gated channel subfamily c member 4-like (kcnc4/Kv3.4)

VMN-Summer

Potassium voltage-gated channel subfamily h member 5-like

VMN-Summer

Potassium voltage-gated channel subfamily kqt member 2-like (kcnq2/Kv7.2)

All-Summer

Sodium channel protein type 8 subunit alpha-like

VMN-Summer

Sodium channel subunit beta-4-like

VMN-Summer

Transient receptor potential cation channel subfamily m member 7-like (trpm7)

VMN-Summer

Two pore calcium channel protein 1-like

Steroid receptors and metabolic enzymes

VMN-Summer

3-keto-steroid reductase-like

All-Summer

Androgen receptor alpha (ar-a)

VMN-Summer

Androgen-induced gene 1

All-Summer

Cholesterol 25-hydroxylase-like protein member 1-like

Peak-SNV

Estrogen receptor alpha (esr1)

VMN-Summer

Glucocorticoid receptor (nr3c1)

VMN-Summer

Hydroxysteroid dehydrogenase-like protein 2

VMN-Summer

Neutral cholesterol ester hydrolase 1-like

VMN-Summer

Oxysterol-binding protein 10 isoform 1

VMN-Summer

Oxysterol-binding protein 8-like

Peak-SNV

Oxysterol-binding protein 9-like isoform 3

Peak-SNV

Sterol 26- mitochondrial-like

Peptide hormones and receptors

VMN-Summer, All-VMN

Calcitonin gene-related peptide precursor

 

Peak-SNV

Growth hormone receptor

 

All-Summer

Growth hormone-regulated tbc protein 1-a-like

 

VMN-Summer

Insulin gene enhancer protein isl-2a-like

 

All-Summer

Insulin receptor-like

 

VMN-Summer

Insulin-like growth factor-binding protein 1-like

 

VMN-Summer

Opioid growth factor receptor-like

 

VMN-Summer

Parathyroid hormone/parathyroid hormone-related peptide receptor-like

Melatonin

All-Summer

Acetylserotonin o-methyltransferase-like

  1. Functionally important candidate genes found in All-Summer, VMN-summer, and Peak-SNV clusters. Different transcripts with the same sequence description found in both VMN and H clusters are not listed. Additionally, duplicate descriptions from multiple isoforms within each cluster type were reported only once. Genes mentioned in the text or shown in figures have gene symbols in parentheses.