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Table 5 Functionally important candidate genes showing daily and seasonal regulation

From: Neural transcriptome reveals molecular mechanisms for temporal control of vocalization across multiple timescales

Category Cluster pattern Blast2GO description
Neurotransmission Peak-SNV Anoctamin-10-like isoform x1
Peak-SNV Anoctamin-10-like isoform x4
Peak-SNV ATP-sensitive inward rectifier potassium channel 8-like
Peak-SNV Calcium-activated potassium channel subunit alpha-1-like (kcnma1/Kca1.1) isoform x1
Peak-SNV Calcium-activated potassium channel subunit alpha-1-like (kcnma1/Kca1.1) isoform x4
Peak-SNV GABA receptor subunit pi-like (gabrp)
All-Summer Gap junction alpha 1 (cx43)
VMN-Summer, Peak-SNV Gap junction beta 6 (cx30)
VMN-Summer Glutamate ionotropic kainate 4
All-Summer Glycine receptor subunit beta
VMN-Summer Glycine receptor subunit beta-like
VMN-Summer, Peak-SNV Neuronal acetylcholine receptor subunit alpha-3-like
Peak-SNV Neuronal acetylcholine receptor subunit beta-2-like (chrnb2)
All-Summer Potassium voltage-gated channel subfamily c member 4-like (kcnc4/Kv3.4)
VMN-Summer Potassium voltage-gated channel subfamily h member 5-like
VMN-Summer Potassium voltage-gated channel subfamily kqt member 2-like (kcnq2/Kv7.2)
All-Summer Sodium channel protein type 8 subunit alpha-like
VMN-Summer Sodium channel subunit beta-4-like
VMN-Summer Transient receptor potential cation channel subfamily m member 7-like (trpm7)
VMN-Summer Two pore calcium channel protein 1-like
Steroid receptors and metabolic enzymes VMN-Summer 3-keto-steroid reductase-like
All-Summer Androgen receptor alpha (ar-a)
VMN-Summer Androgen-induced gene 1
All-Summer Cholesterol 25-hydroxylase-like protein member 1-like
Peak-SNV Estrogen receptor alpha (esr1)
VMN-Summer Glucocorticoid receptor (nr3c1)
VMN-Summer Hydroxysteroid dehydrogenase-like protein 2
VMN-Summer Neutral cholesterol ester hydrolase 1-like
VMN-Summer Oxysterol-binding protein 10 isoform 1
VMN-Summer Oxysterol-binding protein 8-like
Peak-SNV Oxysterol-binding protein 9-like isoform 3
Peak-SNV Sterol 26- mitochondrial-like
Peptide hormones and receptors VMN-Summer, All-VMN Calcitonin gene-related peptide precursor
  Peak-SNV Growth hormone receptor
  All-Summer Growth hormone-regulated tbc protein 1-a-like
  VMN-Summer Insulin gene enhancer protein isl-2a-like
  All-Summer Insulin receptor-like
  VMN-Summer Insulin-like growth factor-binding protein 1-like
  VMN-Summer Opioid growth factor receptor-like
  VMN-Summer Parathyroid hormone/parathyroid hormone-related peptide receptor-like
Melatonin All-Summer Acetylserotonin o-methyltransferase-like
  1. Functionally important candidate genes found in All-Summer, VMN-summer, and Peak-SNV clusters. Different transcripts with the same sequence description found in both VMN and H clusters are not listed. Additionally, duplicate descriptions from multiple isoforms within each cluster type were reported only once. Genes mentioned in the text or shown in figures have gene symbols in parentheses.