Skip to main content

Table 5 Quantification of overlaps between unaligned sequences in the central heterochromatin of chromosome 5

From: Homologues of potato chromosome 5 show variable collinearity in the euchromatin, but dramatic absence of sequence similarity in the pericentromeric heterochromatin

Haplotype sequence Number of sequences (MTPs or superscaffolds) Total length (kb) Overlap between haplotypes in kb (above diagonal) and in percentage (below diagonal)
RH haplotype {0} MTPs RH haplotype {1} MTPs DM superscaffolds
RH haplotype {0} MTPs 24 12764 -------- 2550 4608
RH haplotype {1} MTPs 13 10004 25.5 (a) -------- 2104
DM superscaffolds 10 15192 36.0 (b) 21.0 (b) --------
  1. (a) Percent phase 1 sequence recovered in phase 0 sequence.
  2. (b) Percent RH sequence recovered in DM.