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Table 2 Aqu1 and Aqu2 gene annotation comparison

From: Deep developmental transcriptome sequencing uncovers numerous new genes and enhances gene annotation in the sponge Amphimedon queenslandica

 

Aqu1

Aqu2

Total gene number

30,060

40,122

Total length (% genome)

69.3 Mb (47.82%)

93.5 Mb (64.52%)

Average gene length *

2,426 bp

2,521 bp

Smallest gene *

81 bp

149 bp

Longest gene *

86,995 bp

103,992 bp

Total isoform number

30,060

47,895

Total exon number

171,753

206,984

Average exon length

218 bp

225 bp

Average exons per gene

5.7

5.2

Max exons per gene

97

103

Total intron number

140,027

166,862

Average intron length

253 bp

327 bp

ORF

  

  Total length

35.6 Mb

42.6 Mb

  Average size

1,184 bp

1,062 bp

  Longest

47,676 bp

56,682 bp

5’ UTRs

  

  Total number

4,457

9,873

  Total length

0.6 Mb

1.13 Mb

  Average size

130 bp

114 bp

  Longest

2,318 bp

4,952 bp

3' UTRs

  

  Total number

6,021

14,892

  Total length

1. 3 Mb

2.8 Mb

  Average size

211 bp

188 bp

  Longest

2,268 bp

2,814 bp

  1. *Includes introns and exons.