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Table 2 Aqu1 and Aqu2 gene annotation comparison

From: Deep developmental transcriptome sequencing uncovers numerous new genes and enhances gene annotation in the sponge Amphimedon queenslandica

  Aqu1 Aqu2
Total gene number 30,060 40,122
Total length (% genome) 69.3 Mb (47.82%) 93.5 Mb (64.52%)
Average gene length * 2,426 bp 2,521 bp
Smallest gene * 81 bp 149 bp
Longest gene * 86,995 bp 103,992 bp
Total isoform number 30,060 47,895
Total exon number 171,753 206,984
Average exon length 218 bp 225 bp
Average exons per gene 5.7 5.2
Max exons per gene 97 103
Total intron number 140,027 166,862
Average intron length 253 bp 327 bp
ORF   
Total length 35.6 Mb 42.6 Mb
Average size 1,184 bp 1,062 bp
Longest 47,676 bp 56,682 bp
5’ UTRs   
Total number 4,457 9,873
Total length 0.6 Mb 1.13 Mb
Average size 130 bp 114 bp
Longest 2,318 bp 4,952 bp
3' UTRs   
Total number 6,021 14,892
Total length 1. 3 Mb 2.8 Mb
Average size 211 bp 188 bp
Longest 2,268 bp 2,814 bp
  1. *Includes introns and exons.