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Table 3 Alternative splicing in Amphimedon queenslandica

From: Deep developmental transcriptome sequencing uncovers numerous new genes and enhances gene annotation in the sponge Amphimedon queenslandica

Abbreviation AS Type AS events* Number of transcripts % of AS events % of AS transcripts + % of All transcripts
IntRt Intron retention 12,610 8,643 45.0% 57.1% 18.0%
AltTEx Alternative Terminal Exon 6,191 4,442 22.1% 29.3% 9.3%
AltAc Alternative Acceptor 4,843 4,163 17.3% 27.5% 8.7%
AltDo Alternative Donor 3,562 3,175 12.7% 21.0% 6.6%
ExSk Exon skipping 513 500 1.8% 3.3% 1.0%
IntSt Intronic Start 148 148 0.5% 1.0% 0.3%
IntEnd Intronic End 132 132 0.5% 0.9% 0.3%
  1. *AS events supported by three or more transcripts.
  2. +The total percentage of transcripts is higher than 100% as different types of AS events can occur in the same transcript.