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Table 1 Sequence and variants overview

From: Using whole-genome sequences of the LG/J and SM/J inbred mouse strains to prioritize quantitative trait genes and nucleotides

Strain Total reads % Mapped to reference Coverage SNPs Strain-Specific SNPs* Indels Strain-Specific Indels* SVs Strain-Specific SVs*
LG/J 9.6x108 91.72 35X 4,663,723 146,814 1,127,072 56,469 12,802 1,361
SM/J 7.7x108 92.67 30X 4,792,568 227,132 1,127,458 65,935 15,564 2,255
  1. *Refers to strain-specific variants with respect to 18 other available mouse genome sequences.