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Table 1 Sequence and variants overview

From: Using whole-genome sequences of the LG/J and SM/J inbred mouse strains to prioritize quantitative trait genes and nucleotides

Strain

Total reads

% Mapped to reference

Coverage

SNPs

Strain-Specific SNPs*

Indels

Strain-Specific Indels*

SVs

Strain-Specific SVs*

LG/J

9.6x108

91.72

35X

4,663,723

146,814

1,127,072

56,469

12,802

1,361

SM/J

7.7x108

92.67

30X

4,792,568

227,132

1,127,458

65,935

15,564

2,255

  1. *Refers to strain-specific variants with respect to 18 other available mouse genome sequences.