Skip to main content

Table 4 Variants of predicted functional importance

From: Using whole-genome sequences of the LG/J and SM/J inbred mouse strains to prioritize quantitative trait genes and nucleotides

  LRT PolyPhen2 SIFT Highly Informative Highly Informative
TFBS (SNPs) TFBS (Indels)
LG/J 800 2,748 2,198 578 61
SM/J 928 2,907 2,271 629 60
Polymorphic* 950 3,353 2,691 662 90
  1. *Refers to polymorphisms between LG/J and SM/J.