Table 2 Prediction of the functional consequences of the SNVs
From: Genomic landscape of rat strain and substrain variation
Type | Impact | Count | Fraction | Sum |
|---|---|---|---|---|
Stop gained | High | 285 | 0.0% | 696 |
Splice site donor | 209 | 0.0% | ||
Splice site acceptor | 158 | 0.0% | ||
Start lost | 26 | 0.0% | ||
Stop lost | 18 | 0.0% | ||
Non synonymous coding | Moderate | 26,239 | 0.3% | 26,239 |
Synonymous coding | Low | 42,182 | 0.4% | 42,947 |
Start gained | 725 | 0.0% | ||
Synonymous stop | 35 | 0.0% | ||
Non synonymous start | 5 | 0.0% | ||
Intergenic | Modifier | 6,509,332 | 62.2% | 10,394,771 |
Intron | 2,991,180 | 28.6% | ||
Downstream | 430,875 | 4.1% | ||
Upstream | 427,613 | 4.1% | ||
UTR 3 Prime | 27,145 | 0.3% | ||
UTR 5 Prime | 4,357 | 0.0% | ||
Exon | 4,269 | 0.0% | ||
Total effects | 10,464,653 | 10,464,653 |