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Table 1 Description of candidate genes and interrogated SNP

From: Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle

Gene

Gene position (chromosome - bp)*

SNP location (chromosome - bp)

NCBI SNP number

Variation (5’orientation)

Position in CDS

Position in protein

Aminoacid substitution

TEKT4

25: 871,130..877,122

874,677

rs109315777

T/A

584

195

M/K

LOC100138021

X:49,737,023..49,737,868

49,737,296

rs461402021

G/C

573

191

I/M

CENPI

X:54,969,324..55,038,297

54,971,267

rs134782295

G/A

143

48

S/N

TAF7L**

X:55,127,019..55,144,665

55,133,975

rs445729496

C/T

829/535

277/179

A/T

NXF2

X:55,592,336..55,604,610

55,602,546

ss1026566625

T/C

661

221

N/D

CYLC1

X:69,903,617..69,933,552

69,914,225

rs477320469

T/A

818

273

Y/F

UXT

X:91,468,065..91,474,474

91,472,521

rs132821996

C/T

344

115

S/N

SPACA5

X:92,799,368..92,801,705

92,801,539

rs211186307

C/T

109

37

G/S

  1. *position in UMD3.1(Ensembl)
  2. **gene with splicing variants