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Table 7 SNP association analysis in cow population

From: Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle

   

Brahman

Tropical Composite

Trait

Gene

Allele

p-value

Effect

SE

p-value

Effect

SE

AGECL

TEKT4

A

0.074

−14.14

7.845

0.732

−1.78

5.323

 

LOC100138021

G

0.382

8.489

9.701

0.588

−3.643

6.792

 

CENPI

A

0.462

−7.269

9.916

0.556

3.661

6.271

 

TAF7L

T

0.272

−10.66

9.661

0.498

4.602

6.817

 

NXF2

C

0.373

−6.142

6.883

0.86

1.362

8.079

 

CYLC1

A

0.861

1.122

6.713

0.29

8.478

7.972

 

TEX11_38

A

0.932

0.6909

8.611

0.775

1.891

6.825

 

TEX11_696

A

0.821

1.859

8.549

0.805

1.661

6.987

 

AR

A

0.022

15.79

6.833

0.747

−2.314

7.377

 

UXT

T

0.062

13.27

7.039

0.918

−1.027

10.59

 

SPACA5

T

0.196

18.18

13.95

0.874

−1.091

7.238

PPAI

TEKT4

A

0.276

−9.85

8.994

0.792

1.287

5.048

 

LOC100138021

G

0.138

15.61

10.43

0.579

3.636

6.607

 

CENPI

A

0.574

5.844

10.48

0.281

6.447

5.943

 

TAF7L

T

0.224

13.01

10.62

0.467

4.797

6.604

 

NXF2

C

0.907

−0.8449

7.67

0.331

7.511

7.703

 

CYLC1

A

0.616

−3.604

7.283

0.369

6.873

7.629

 

TEX11_38

A

0.468

−6.915

9.559

0.278

7.073

6.490

 

TEX11_696

A

0.593

−5.026

9.504

0.246

7.696

6.598

 

AR

A

0.665

3.195

7.511

0.485

4.831

6.943

 

UXT

T

0.316

−7.496

7.436

0.516

−6.693

10.37

 

SPACA5

T

0.19

18.91

14.31

0.823

1.479

6.849

  1. Significance (p-value), allelic substitution effect (Effect) for the named allele of each SNP and its standard error (SE) of the genotypes of each SNP on age at first corpus luteum (AGECL) and postpartum anestrus interval (PPAI).
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BMC Genomics

ISSN: 1471-2164

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