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Table 7 SNP association analysis in cow population

From: Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle

    Brahman Tropical Composite
Trait Gene Allele p-value Effect SE p-value Effect SE
AGECL TEKT4 A 0.074 −14.14 7.845 0.732 −1.78 5.323
  LOC100138021 G 0.382 8.489 9.701 0.588 −3.643 6.792
  CENPI A 0.462 −7.269 9.916 0.556 3.661 6.271
  TAF7L T 0.272 −10.66 9.661 0.498 4.602 6.817
  NXF2 C 0.373 −6.142 6.883 0.86 1.362 8.079
  CYLC1 A 0.861 1.122 6.713 0.29 8.478 7.972
  TEX11_38 A 0.932 0.6909 8.611 0.775 1.891 6.825
  TEX11_696 A 0.821 1.859 8.549 0.805 1.661 6.987
  AR A 0.022 15.79 6.833 0.747 −2.314 7.377
  UXT T 0.062 13.27 7.039 0.918 −1.027 10.59
  SPACA5 T 0.196 18.18 13.95 0.874 −1.091 7.238
PPAI TEKT4 A 0.276 −9.85 8.994 0.792 1.287 5.048
  LOC100138021 G 0.138 15.61 10.43 0.579 3.636 6.607
  CENPI A 0.574 5.844 10.48 0.281 6.447 5.943
  TAF7L T 0.224 13.01 10.62 0.467 4.797 6.604
  NXF2 C 0.907 −0.8449 7.67 0.331 7.511 7.703
  CYLC1 A 0.616 −3.604 7.283 0.369 6.873 7.629
  TEX11_38 A 0.468 −6.915 9.559 0.278 7.073 6.490
  TEX11_696 A 0.593 −5.026 9.504 0.246 7.696 6.598
  AR A 0.665 3.195 7.511 0.485 4.831 6.943
  UXT T 0.316 −7.496 7.436 0.516 −6.693 10.37
  SPACA5 T 0.19 18.91 14.31 0.823 1.479 6.849
  1. Significance (p-value), allelic substitution effect (Effect) for the named allele of each SNP and its standard error (SE) of the genotypes of each SNP on age at first corpus luteum (AGECL) and postpartum anestrus interval (PPAI).
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