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Table 2 Summary of SNPs significantly associated with complex traits

From: Unravelling the complex trait of harvest index in rapeseed (Brassica napus L.) with association mapping

Trait

SNP

Chromosome

Position

Allele

MAF

P Value

R2 (%)

PH

Bn-scaff_16300_1-p216539

C2

31484854

[T/C]

0.22

6.63E-06

1.19

 

Bn-scaff_16300_1-p222857

C2

31483855

[T/G]

0.23

6.82E-06

 

BN

Bn-A03-p22138059

A3

22138109

[T/C]

0.24

6.45E-06

2.04

 

Bn-A03-p22145945

A3

22145995

[T/C]

0.24

7.23E-06

 
 

Bn-A03-p22237846

A3

22237796

[A/G]

0.23

8.40E-06

 
 

Bn-A03-p22238801

A3

22238851

[A/G]

0.25

9.36E-06

 
 

Bn-A03-p22149000

A3

22148950

[T/G]

0.25

9.40E-06

 
 

Bn-A03-p14121492

A3

14121442

[T/C]

0.3

1.74E-05

 

SY

Bn-scaff_16962_1-p506943

C8

18144556

[A/G]

0.34

1.78E-05

3.96

 

Bn-scaff_16962_1-p519147

C8

18381806

[T/C]

0.34

2.01E-05

 
 

Bn-scaff_16962_1-p494346

C8

18403153

[A/G]

0.33

2.10E-05

 
 

Bn-scaff_16962_1-p378035

C8

18497622

[T/G]

0.35

2.24E-05

 
 

Bn-scaff_16962_1-p504805

C8

18395390

[A/G]

0.34

2.31E-05

 
 

Bn-scaff_16962_1-p543498

C8

18359355

[A/G]

0.33

2.31E-05

 
 

Bn-scaff_16962_1-p359041

C8

18499598

[T/C]

0.35

2.55E-05

 
 

Bn-scaff_16962_1-p376380

C8

18498612

[T/G]

0.36

2.55E-05

 
 

Bn-scaff_16962_1-p432767

C8

18466493

[A/G]

0.36

2.55E-05

 
 

Bn-scaff_16962_1-p441134

C8

18458145

[T/G]

0.36

2.55E-05

 
 

Bn-scaff_16962_1-p542817

C8

18365405

[A/G]

0.34

2.66E-05

 

BY

Bn-A01-p8418102

A1

8418052

[A/G]

0.39

1.63E-05

0.76

HI

Bn-scaff_16231_1-p2306931

C8

18546937

[T/C]

0.49

8.14E-07

3.42

 

Bn-scaff_16962_1-p426711

C8

18472658

[T/C]

0.35

1.12E-06

 
 

Bn-scaff_16231_1-p2303901

C8

18301213

[A/G]

0.5

1.28E-06

 
 

Bn-scaff_16962_1-p378035

C8

18497622

[T/G]

0.35

1.59E-06

 
 

Bn-scaff_16962_1-p359041

C8

18499598

[T/C]

0.35

1.68E-06

 
 

Bn-scaff_16962_1-p376380

C8

18498612

[T/G]

0.36

1.68E-06

 
 

Bn-scaff_16962_1-p432767

C8

18466493

[A/G]

0.36

1.68E-06

 
 

Bn-scaff_16962_1-p441134

C8

18458145

[T/G]

0.36

1.68E-06

 
 

Bn-scaff_16962_1-p351914

C8

18506723

[T/G]

0.48

1.71E-05

 
  1. MAF Minor allele frequency, R 2 (%) Amount of phenotypic variation for each trait explained by multiple SNPs.
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