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Table 2 Summary of SNPs significantly associated with complex traits

From: Unravelling the complex trait of harvest index in rapeseed (Brassica napus L.) with association mapping

Trait SNP Chromosome Position Allele MAF P Value R2 (%)
PH Bn-scaff_16300_1-p216539 C2 31484854 [T/C] 0.22 6.63E-06 1.19
  Bn-scaff_16300_1-p222857 C2 31483855 [T/G] 0.23 6.82E-06  
BN Bn-A03-p22138059 A3 22138109 [T/C] 0.24 6.45E-06 2.04
  Bn-A03-p22145945 A3 22145995 [T/C] 0.24 7.23E-06  
  Bn-A03-p22237846 A3 22237796 [A/G] 0.23 8.40E-06  
  Bn-A03-p22238801 A3 22238851 [A/G] 0.25 9.36E-06  
  Bn-A03-p22149000 A3 22148950 [T/G] 0.25 9.40E-06  
  Bn-A03-p14121492 A3 14121442 [T/C] 0.3 1.74E-05  
SY Bn-scaff_16962_1-p506943 C8 18144556 [A/G] 0.34 1.78E-05 3.96
  Bn-scaff_16962_1-p519147 C8 18381806 [T/C] 0.34 2.01E-05  
  Bn-scaff_16962_1-p494346 C8 18403153 [A/G] 0.33 2.10E-05  
  Bn-scaff_16962_1-p378035 C8 18497622 [T/G] 0.35 2.24E-05  
  Bn-scaff_16962_1-p504805 C8 18395390 [A/G] 0.34 2.31E-05  
  Bn-scaff_16962_1-p543498 C8 18359355 [A/G] 0.33 2.31E-05  
  Bn-scaff_16962_1-p359041 C8 18499598 [T/C] 0.35 2.55E-05  
  Bn-scaff_16962_1-p376380 C8 18498612 [T/G] 0.36 2.55E-05  
  Bn-scaff_16962_1-p432767 C8 18466493 [A/G] 0.36 2.55E-05  
  Bn-scaff_16962_1-p441134 C8 18458145 [T/G] 0.36 2.55E-05  
  Bn-scaff_16962_1-p542817 C8 18365405 [A/G] 0.34 2.66E-05  
BY Bn-A01-p8418102 A1 8418052 [A/G] 0.39 1.63E-05 0.76
HI Bn-scaff_16231_1-p2306931 C8 18546937 [T/C] 0.49 8.14E-07 3.42
  Bn-scaff_16962_1-p426711 C8 18472658 [T/C] 0.35 1.12E-06  
  Bn-scaff_16231_1-p2303901 C8 18301213 [A/G] 0.5 1.28E-06  
  Bn-scaff_16962_1-p378035 C8 18497622 [T/G] 0.35 1.59E-06  
  Bn-scaff_16962_1-p359041 C8 18499598 [T/C] 0.35 1.68E-06  
  Bn-scaff_16962_1-p376380 C8 18498612 [T/G] 0.36 1.68E-06  
  Bn-scaff_16962_1-p432767 C8 18466493 [A/G] 0.36 1.68E-06  
  Bn-scaff_16962_1-p441134 C8 18458145 [T/G] 0.36 1.68E-06  
  Bn-scaff_16962_1-p351914 C8 18506723 [T/G] 0.48 1.71E-05  
  1. MAF Minor allele frequency, R 2 (%) Amount of phenotypic variation for each trait explained by multiple SNPs.