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Table 2 The Kyoto encyclopedia of gene and genomes (KEGG) pathways affected by DBM in P-type B. vulgaris

From: Expression patterns, molecular markers and genetic diversity of insect-susceptible and resistant Barbarea genotypes by comparative transcriptome analysis

Kegg_pathway

ko_id

DifferentFr N out of 758

GenomeFr N out of 14269

P-value

Corrected P-value

Nitrogen metabolism

ko00910

17 (2.24 %)

80 (0.56 %)

7.75E-7

1.56E-4

Phenylpropanoid biosynthesis

ko00940

14 (1.85 %)

86 (0.60 %)

1.62E-4

0.0326

Photosynthesis - antenna proteins

ko00196

11 (1.45 %)

57 (0.40 %)

1.73 E-4

0.0348

Flavonoid biosynthesis

ko00941

7 (0.92 %)

25 (0.18 %)

2.40 E-4

0.0483

alpha-Linolenic acid metabolism

ko00592

8 (1.06 %)

38 (0.27 %)

7.21 E-4

0.145

Phenylalanine metabolism

ko00360

11 (1.45 %)

78 (0.55 %)

2.65E-3

0.533

Mineral absorption

ko04978

4 (0.53 %)

12 (0.08 %)

2.78 E-3

0.558

Sesquiterpenoid biosynthesis

ko00909

2 (0.26 %)

2 (0.014 %)

2.82 E-3

0.567

Stilbenoid, diarylheptanoid and gingerol biosynthesis

ko00945

7 (0.92 %)

43 (0.30 %)

7.02 E-3

1

Alanine, aspartate and glutamate metabolism

ko00250

9 (1.19 %)

65(0.46 %)

7.11 E-3

1

Circadian rhythm - plant

ko04712

6 (0.79 %)

33 (0.23 %)

7.13 E-3

1

Aminobenzoate degradation

ko00627

7 (0.92 %)

47 (0.33 %)

0.0114

1

Valine, leucine and isoleucine biosynthesis

ko00290

10 (1.32 %)

83 (0.58 %)

0.0123

1

Glycan binding proteins

ko04091

4 (0.53 %)

18 (0.13 %)

0.0133

1

D-Glutamine and D-glutamate metabolism

ko00471

2 (0.26 %)

4 (0.028 %)

0.0157

1

Glucosinolate biosynthesis

ko00966

3 (0.39 %)

12 (0.084 %)

0.0229

1

Arginine and proline metabolism

ko00330

11(1.45 %)

105( 0.74 %)

0.0235

1

Sulfur metabolism

ko00920

6 (0.79 %)

43 (0.30 %)

0.0251

1

Photosynthesis proteins

ko00194

16 (2.11 %)

180 (1.26 %)

0.0303

1

beta-Alanine metabolism

ko00410

6 (0.79 %)

48 (0.34 %)

0.0405

1

Tryptophan metabolism

ko00380

8 (1.06 %)

75 (0.53 %)

0.0450

1

Zeatin biosynthesis

ko00908

3 (0.40 %)

16 (0.11 %)

0.0498

1

Protein processing in endoplasmic reticulum

ko04141

18 (2.37 %)

223 (1.56 %)

0.0509

1

  1. DifferentFr, differentially expressed frequency, indicating the number and percentage of differentially expressed genes in each cluster; GenomeFr, genome frequency, indicating the number and percentage of the transcriptome distributed in each cluster.
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BMC Genomics

ISSN: 1471-2164

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