Skip to main content

Table 2 List of miRNA targets, discussed in the paper. List of miRNA and their respective targets as identified by TARGET FINDER, and divided per plant organ. GRAPE_IGGP_v1 12X assembly - v2 annotation was used. Only the miRNA/targets pair discussed in the paper are shown. All these miRNA targets are also confirmed by psRNATarget, with the exception of VIT_210s0003g00870, VIT_216s0022g02450, VIT_216s0100g00030

From: miRVine: a microRNA expression atlas of grapevine based on small RNA sequencing

Tissues vvi-miRNA Target Predicted function
Inflorescence/Flowers miR156a; miR156b-5p; miR156c-5p; miR156d-5p; miR156e; miR156f; miR156g-5p; miR156i VIT_208s0007g06270 Squamosa promoter-binding-like protein 9-like
VIT_211s0065g00170 Squamosa promoter-binding-like protein 12-like
VIT_201s0010g03710 Squamosa promoter-binding-like protein 2
VIT_201s0011g00130 Squamosa promoter-binding-like protein 6-like
VIT_201s0010g03910 Squamosa promoter-binding-like protein 13-like
VIT_215s0021g02290 Squamosa promoter-binding-like protein 7-like
VIT_217s0000g01260 Squamosa promoter-binding-like protein 13
VIT_217s0000g05020 Squamosa promoter-binding-like protein 6-like
miR156a; miR156b-5p; miR156c-5p; miR156d-5p; miR156e VIT_214s0068g01780 Squamosa promoter-binding-like protein 16-like
miR156b-5p; miR156c-5p; miR156d-5p; miR156e VIT_219s0090g01180 Uncharacterized protein
miR156b-5p; miR156c-5p; miR156d-5p VIT_215s0046g01020 Uncharacterized protein loc100241322
miR156e VIT_204s0008g02640 Plastid-lipid-associated protein 8
miR172c-3p VIT_213s0019g03550 AP2 domain-containing transcription factor
miR172c-3p; miR172d VIT_207s0031g00220 Transcription factor Apetala2
VIT_206s0004g03590 Transcription factor Apetala2
VIT_208s0040g03180 AP2 domain-containing transcription factor
miR172d VIT_200s0184g00102 AP2 domain-containing transcription factor
miR390-5p VIT_210s0003g01890 LRR receptor-like serine threonine-protein kinase RFK1
VIT_216s0098g01090 Leucine-rich repeat receptor-like protein kinase PEPR1
miR393a-5p; miR393b VIT_214s0068g01330 LRR receptor-like serine threonine-protein kinase RFK1
VIT_207s0104g01320 Transport inhibitor response 1
VIT_214s0030g01240 Transport inhibitor response 1
grape-m9269 VIT_208s0007g05240 Phosphatidylinositol-4-phosphate 5-kinase
Stamen grape-m5380; grape-m7774 VIT_205s0049g00340 1-aminocyclopropane-1-carboxylate oxidase homolog 1
VIT_200s1313g00010 1-aminocyclopropane-1-carboxylate oxidase homolog 1
VIT_205s0049g00330 1-aminocyclopropane-1-carboxylate oxidase homolog 1
VIT_205s0049g00370 1-aminocyclopropane-1-carboxylate oxidase homolog 1
VIT_216s0022g02420 Protein
VIT_216s0100g00030 Cucumisin-like
VIT_216s0022g02450 Protein
VIT_205s0049g00350 1-aminocyclopropane-1-carboxylate oxidase homolog 1
Berry development miR319b-3p; miR319c-3p; miR319f-3p; miR319g VIT_213s0067g01630 Transcription factor gamyb-like
VIT_210s0003g00870 Transcription factor TCP4-like
miR319c-5p VIT_214s0081g00480 Protein
miR395a; miR395c-3p; miR395d; miR395e-3p; miR395f-3p; miR395g-3p; miR395h-3p; miR395i-3p; miR395j-3p; miR395k-3p; miR395l-3p VIT_207s0031g00940 Sulphate bicarbonate oxalate exchanger and transporter SAT-1
miR395h-5p; miR395k-5p VIT_214s0066g00910 Protein
miR395n VIT_205s0020g04210 ATP sulphurylase
miR396a-3p VIT_207s0031g02320 Protein
VIT_200s0208g00090 Protein trichome birefringence-like 16
miR396a-5p VIT_210s0597g00040 Pentatricopeptide repeat-containing protein
VIT_202s0025g04910 Growth-regulating factor
VIT_215s0048g01740 Growth-regulating factor
VIT_200s0494g00010 Transcription activator
VIT_218s0001g08650 Uncharacterized protein loc100260890
miR396a-5p; miR396c-5p; miR396d-5p VIT_216s0039g01450 Growth-regulating factor 1
VIT_209s0002g01350 Growth-regulating factor 5
VIT_211s0016g01250 Growth-regulating factor 5
VIT_208s0007g03760 Growth-regulating factor 4
VIT_216s0098g01080 Protein
VIT_202s0025g02680 Uncharacterized protein loc100258227
miR396a-5p; miR396b-5p VIT_207s0191g00220 Uncharacterized protein loc100251922
miR396b-3p VIT_201s0011g01220 Double top
miR396c-3p VIT_205s0077g02140 Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-A
miR396d-3p VIT_215s0024g00350 TATA box binding protein associated factor-like protein
grape-m6905 VIT_213s0064g00290 bifunctional dihydroflavonol 4-reductase flavanone 4-reductase-like
VIT_213s0047g00940 bifunctional dihydroflavonol 4-reductase flavanone 4-reductase-like
VIT_203s0110g00350 Cinnamoyl reductase-like protein
VIT_213s0047g00990 bifunctional dihydroflavonol 4-reductase flavanone 4-reductase-like
VIT_213s0064g00340 Phenylacetaldehyde reductase
VIT_213s0067g00530 bifunctional dihydroflavonol 4-reductase flavanone 4-reductase-like
VIT_213s0067g00460 bifunctional dihydroflavonol 4-reductase flavanone 4-reductase-like
VIT_213s0047g00540 bifunctional dihydroflavonol 4-reductase flavanone 4-reductase-like