Table 1 QTL Models (phenotypes and explained variance). The table shows the positions for the identified loci (rows) for each phenotype (columns). For each loci the additive component is shown as being either C3H >B6 or C3H <B6 indicating in which genotype the phenotype value is higher. Dominance, if present, is shown by a (D) next to the appropriate parental strain. Finally the variance explained and LOD score (in parentheses) are shown as determined by removing that term from the analysis. Although several of the models involved interactions they are not indicated in this table
From: High-throughput phenotyping and genetic linkage of cortical bone microstructure in the mouse
Chr | Pos (cM) | BMD | Cortical thickness | Cortical thickness variance | Canal density | Lacuna density | Mean lacuna volume | Mean lacuna stretch |
|---|---|---|---|---|---|---|---|---|
1 | 89.9 | C3H (D) >B6, 5.73 (12.77) | ||||||
1 | 22.3 | C3H >B6, 4.07 (8.53) | ||||||
1 | 97.1 | C3H >B6, 3.42 (7.20) | ||||||
1 | 59.0 | C3H >B6, 1.71 (3.13) | ||||||
1 | 81.5 | C3H >B6, 2.28 (6.16) | ||||||
3 | 39.2 | C3H <B6, 1.81 (3.32) | ||||||
4 | 52.1 | C3H >B6, 4.82 (10.81) | ||||||
5 | 53.8 | C3H >B6, 1.68 (4.55) | ||||||
5 | 68.0 | C3H >B6 (D), 6.97 (18.11) | ||||||
5 | 68.2 | C3H >B6 (D), 3.45 (6.52) | ||||||
6 | 20.8 | C3H <B6, 3.33 (7.55) | ||||||
6 | 61.7 | C3H (D) >B6, 2.10 (4.80) | ||||||
6 | 63.4 | C3H >B6, 1.08 (2.31) | C3H >B6, 2.35 (4.29) | |||||
6 | 4.1 | C3H (D) <B6, 0.53 (1.00) | ||||||
6 | 18.9 | C3H <B6 (D), 2.77 (5.25) | ||||||
7 | 2.2 | C3H >B6, 1.91 (4.38) | ||||||
7 | 60.6 | C3H >B6, 4.24 (8.89) | ||||||
7 | 43.3 | C3H >B6, 2.60 (7.00) | ||||||
7 | 1.7 | C3H (D) <B6, 1.46 (2.80) | ||||||
8 | 18.2 | C3H (D) <B6, 1.85 (5.02) | ||||||
9 | 12.0 | C3H <B6, 3.32 (7.51) | ||||||
9 | 13.2 | C3H (D) <B6, 4.15 (7.25) | ||||||
9 | 40.1 | C3H <B6, 5.59 (10.26) | ||||||
9 | 32.2 | C3H <B6, 4.86 (12.85) | ||||||
10 | 17.8 | C3H >B6, 3.88 (7.19) | ||||||
11 | 45.6 | C3H >B6, 4.53 (9.47) | ||||||
11 | 54.1 | C3H >B6 (D), 1.27 (2.34) | ||||||
11 | 8.8 | C3H >B6, 2.38 (4.52) | ||||||
12 | 16.2 | C3H (D) <B6, 1.79 (3.81) | ||||||
12 | 3.0 | C3H <B6, 2.19 (4.09) | ||||||
12 | 3.6 | C3H <B6, 3.44 (9.20) | ||||||
13 | 10.3 | C3H >B6 (D), 5.81 (12.05) | ||||||
13 | 46.2 | C3H >B6, 2.25 (4.28) | ||||||
14 | 22.1 | C3H >B6, 2.17 (4.96) | ||||||
15 | 21.5 | C3H (D) >B6, 2.92 (6.63) | ||||||
15 | 27.7 | C3H >B6, 2.36 (6.35) | ||||||
17 | 4.9 | C3H <B6, 4.44 (9.99) | ||||||
17 | 7.9 | C3H >B6 (D), 2.65 (4.83) | ||||||
17 | 45.3 | C3H <B6, 1.74 (4.72) | ||||||
18 | 44.5 | C3H >B6, 2.80 (6.36) | ||||||
18 | 15.4 | C3H (D) <B6, 1.64 (3.00) | ||||||
18 | 23.5 | C3H >B6, 3.84 (6.72) | ||||||
18 | 14.6 | C3H >B6, 3.16 (8.46) |