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Table 1 Number of loci showing concordance or discordance between the genome and the Ovine Infinium®HD SNP BeadChip

From: Harnessing cross-species alignment to discover SNPs and generate a draft genome sequence of a bighorn sheep (Ovis canadensis)

  Original filter Stringent filter
Same genotype 377129 314734
Heterozygous on chip, Homozygous in sequence 456 130
Homozygous on chip, Heterozygous in sequence 22837 9565
Alternate homozygotes 7169 5261