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Table 1 Number of loci showing concordance or discordance between the genome and the Ovine Infinium®HD SNP BeadChip

From: Harnessing cross-species alignment to discover SNPs and generate a draft genome sequence of a bighorn sheep (Ovis canadensis)

 

Original filter

Stringent filter

Same genotype

377129

314734

Heterozygous on chip, Homozygous in sequence

456

130

Homozygous on chip, Heterozygous in sequence

22837

9565

Alternate homozygotes

7169

5261