Table 3 miRNAs in which major isomiRs exhibited 5′ variation among tissues and their expression levels
From: Deep sequencing, profiling and detailed annotation of microRNAs in Takifugu rubripes
miRNA | Major sequence | Seed sequence | Expression level | Tissue |
|---|---|---|---|---|
fru-miR-462-5p | GTAACGGAACCCATAATGCAGCT | TAACGGA | 47 | Fast muscle |
fru-miR-462-5p | GTAACGGAACCCATAATGCAGCT | TAACGGA | 119 | Slow muscle |
fru-miR-462-5p | TAACGGAACCCATAATGCAGCT | AACGGAA | 253 | Heart |
fru-miR-462-5p | GTAACGGAACCCATAATGCAGCT | TAACGGA | 30 | Eye |
fru-miR-462-5p | TAACGGAACCCATAATGCAGCT | AACGGAA | 50 | Brain |
fru-miR-462-5p | GTAACGGAACCCATAATGCAGCT | TAACGGA | 1803 | Intestine |
fru-miR-462-5p | GTAACGGAACCCATAATGCAGCT | TAACGGA | 119 | Liver |
fru-miR-462-5p | GTAACGGAACCCATAATGCAGCT | TAACGGA | 87 | Ovaries |
fru-miR-462-5p | GTAACGGAACCCATAATGCAGCT | TAACGGA | 19 | Testes |
fru-miR-101b-3p | GTACAGTACTATGATAACTGA | TACAGTA | 85 | Fast muscle |
fru-miR-101b-3p | GTACAGTACTATGATAACTGA | TACAGTA | 75 | Slow muscle |
fru-miR-101b-3p | GTACAGTACTATGATAACTGA | TACAGTA | 131 | Heart |
fru-miR-101b-3p | GTACAGTACTATGATAACTGA | TACAGTA | 97 | Eye |
fru-miR-101b-3p | TACAGTACTATGATAACTGA | ACAGTAC | 106 | Brain |
fru-miR-101b-3p | GTACAGTACTATGATAACTGA | TACAGTA | 72 | Intestine |
fru-miR-101b-3p | GTACAGTACTATGATAACTGA | TACAGTA | 1774 | Liver |
fru-miR-101b-3p | TACAGTACTATGATAACTGA | ACAGTAC | 24 | Ovaries |
fru-miR-101b-3p | GTACAGTACTATGATAACTGA | TACAGTA | 15 | Testes |
fru-miR-133-3p | TTGGTCCCCTTCAACCAGCCGT | TGGTCCC | 1958 | Fast muscle |
fru-miR-133-3p | TTTGGTCCCCTTCAACCAGCC | TTGGTCC | 785 | Slow muscle |
fru-miR-133-3p | TTGGTCCCCTTCAACCAGCCGT | TGGTCCC | 225 | Heart |
fru-miR-133-3p | TTGGTCCCCTTCAACCAGCCGT | TGGTCCC | 17 | Eye |
fru-miR-133-3p | TTGGTCCCCTTCAACCAGCCGT | TGGTCCC | 4 | Brain |
fru-miR-133-3p | TTGGTCCCCTTCAACCAGCCGT | TGGTCCC | 4 | Intestine |
fru-miR-133-3p | TTTGGTCCCCTTCAACCAGCCG | TTGGTCC | 1 | Liver |
fru-miR-133-3p | TTGGTCCCCTTCAACCAGCCGT | TGGTCCC | 6 | Ovaries |